Clone FMO12517 Report

Search the DGRC for FMO12517

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:17
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7987-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12517.5prime Sequence

1076 bp (938 high quality bases) assembled on 2012-10-30

> FMO12517.5prime
AGTCGACATGAACAACCAGCGATATGGCGGCATCCAGTGGATACAGCACC
ACGTTTCCGCGGGCGACTCCTCCGAGGTGGACATCCTGGAGTCGGATGGT
GGAGCAGGGGCCTCGGGTGAGGATCTGGACCATGTGGCGGCCGAGAATCT
TATATTCATGGCCCGCGACGGTCAGCTAAGTGAGATAATGGCTGCCAACG
AAGCTGGTAGAACGGTCCTGGTCACCGCCGACGGCACCACGGTGGCCTAT
GCGGAATCCTTCGACGATGACGCCCAGGTGGTCACCGAGGAGGTAATCAC
AGACGACTGGGTGCAGCACCAAGGCGCCGAGCGAGTGGAGATTGCTGCCG
AGCAGATAGCTGGGATTAGCAGCTCACAGGAACTGCTGGACATGGAGCAG
GATGAGTACACTGCGCTGAGGCCCTATCCCTGCGACTTTTGCAGTTTGCG
CTTTCGCAAGAAGGCCACCTTGAATAACCATATGCTGGCCCACCAAAATG
ATCGACCGCACCTCTGCAAGCTGTGTGGAGCGCGATTCTCACGACGAGCA
GAGCTCATTAGTCACTTCAAGGCCCACGCAGAGGCCCAGGATGCCGCCGA
TGCCGAGGCAGCAGCGGCGGCAGCCGATTCGTCTTCTGCCATTAAATTCG
AGCATCAGACGCAGCGGCAACTGGACGATCACTACTACGAGCAGGAATGG
CCACTCTTCCAACATCAACAGGAGCAGGAAAACGCGCAACAGAATGTCCA
TCAACAGCATCAGATTGTGGAAAGAGGGCGGGATTCAGCTGGTGGCCAGT
TACCCAGACACGGTAGCTCAACCAGCAGCTCCGTCGCGAGGCAGATCAGT
CGGTTGAAGCCCAAGGAAGAAGCAGCCAGTTCATTGTGATTTCCGACAGT
CGGTGAGACTCTAGGCCATACATGAGCTTGAGCCGCTCAGCTGTGTTACC
ACGTCGAGTTTATTGCTGTCGACCGCTCTCAGCAAACTTCCGGTGCTGAT
CACAGCAAACTTTTTGTGTGTCAGCATGCGATTTGACTTGCCCGGGAAAT
GCACTAGTTCACACCTAGATCACGCG

FMO12517.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7987-RB 4416 CG7987-RB 304..1380 8..1064 4720 97.2 Plus
CG7987-RA 4242 CG7987-RA 130..1206 8..1064 4720 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14573775..14574483 1026..333 2685 96.5 Minus
3R 32079331 3R 14574548..14574873 333..8 1630 100 Minus
Blast to na_te.dros performed 2014-11-28 18:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ivk 5402 Ivk IVK 5402bp 665..701 491..529 109 79.5 Plus

FMO12517.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:32 Download gff for FMO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7987-RB 261..1313 1..1039 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:47 Download gff for FMO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7987-RA 126..1178 1..1039 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:02 Download gff for FMO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7987-RA 126..1178 1..1039 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:02 Download gff for FMO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14573747..14574482 334..1051 96 <- Minus
3R 14574548..14574877 1..333 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:47 Download gff for FMO12517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10399469..10400204 334..1051 96 <- Minus
arm_3R 10400270..10400599 1..333 99   Minus