FMO12517.5prime Sequence
1076 bp (938 high quality bases) assembled on 2012-10-30
> FMO12517.5prime
AGTCGACATGAACAACCAGCGATATGGCGGCATCCAGTGGATACAGCACC
ACGTTTCCGCGGGCGACTCCTCCGAGGTGGACATCCTGGAGTCGGATGGT
GGAGCAGGGGCCTCGGGTGAGGATCTGGACCATGTGGCGGCCGAGAATCT
TATATTCATGGCCCGCGACGGTCAGCTAAGTGAGATAATGGCTGCCAACG
AAGCTGGTAGAACGGTCCTGGTCACCGCCGACGGCACCACGGTGGCCTAT
GCGGAATCCTTCGACGATGACGCCCAGGTGGTCACCGAGGAGGTAATCAC
AGACGACTGGGTGCAGCACCAAGGCGCCGAGCGAGTGGAGATTGCTGCCG
AGCAGATAGCTGGGATTAGCAGCTCACAGGAACTGCTGGACATGGAGCAG
GATGAGTACACTGCGCTGAGGCCCTATCCCTGCGACTTTTGCAGTTTGCG
CTTTCGCAAGAAGGCCACCTTGAATAACCATATGCTGGCCCACCAAAATG
ATCGACCGCACCTCTGCAAGCTGTGTGGAGCGCGATTCTCACGACGAGCA
GAGCTCATTAGTCACTTCAAGGCCCACGCAGAGGCCCAGGATGCCGCCGA
TGCCGAGGCAGCAGCGGCGGCAGCCGATTCGTCTTCTGCCATTAAATTCG
AGCATCAGACGCAGCGGCAACTGGACGATCACTACTACGAGCAGGAATGG
CCACTCTTCCAACATCAACAGGAGCAGGAAAACGCGCAACAGAATGTCCA
TCAACAGCATCAGATTGTGGAAAGAGGGCGGGATTCAGCTGGTGGCCAGT
TACCCAGACACGGTAGCTCAACCAGCAGCTCCGTCGCGAGGCAGATCAGT
CGGTTGAAGCCCAAGGAAGAAGCAGCCAGTTCATTGTGATTTCCGACAGT
CGGTGAGACTCTAGGCCATACATGAGCTTGAGCCGCTCAGCTGTGTTACC
ACGTCGAGTTTATTGCTGTCGACCGCTCTCAGCAAACTTCCGGTGCTGAT
CACAGCAAACTTTTTGTGTGTCAGCATGCGATTTGACTTGCCCGGGAAAT
GCACTAGTTCACACCTAGATCACGCG
FMO12517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7987-RB | 4416 | CG7987-RB | 304..1380 | 8..1064 | 4720 | 97.2 | Plus |
CG7987-RA | 4242 | CG7987-RA | 130..1206 | 8..1064 | 4720 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14573775..14574483 | 1026..333 | 2685 | 96.5 | Minus |
3R | 32079331 | 3R | 14574548..14574873 | 333..8 | 1630 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ivk | 5402 | Ivk IVK 5402bp | 665..701 | 491..529 | 109 | 79.5 | Plus |
FMO12517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:32 Download gff for
FMO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7987-RB | 261..1313 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:47 Download gff for
FMO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7987-RA | 126..1178 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:02 Download gff for
FMO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7987-RA | 126..1178 | 1..1039 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:02 Download gff for
FMO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14573747..14574482 | 334..1051 | 96 | <- | Minus |
3R | 14574548..14574877 | 1..333 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:47 Download gff for
FMO12517.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10399469..10400204 | 334..1051 | 96 | <- | Minus |
arm_3R | 10400270..10400599 | 1..333 | 99 | | Minus |