FMO12518.5prime Sequence
1082 bp (967 high quality bases) assembled on 2012-10-30
> FMO12518.5prime
CGACATGTTTAACAGATTCCGATTGGTGCACAAACAGCTGCGGTTATATA
AGAATTTCGGGCTGCTGGGCCAGAAGGCCAGCGTGGGACTCACATTGCCG
ATCATCAGCTTGTCCAGGCCGTACATGGCGTATATGGGCACCGAGAGGAG
CGTGGTGATGATCACCGCACCAGCTACGAAGGAATTCGCAGAGAGTTCTG
AGCGCAGCAATAGCAGCAAGAAGACTACCAACAAAGAGCAGAGCGACAAA
TCAGCGGAGAGCAGGATGGCCACCAGCGGTATTGTCGAGTCATTTCCCAC
GGGCGCACTGGTGCCCAAGGCGGAGACGGGAGTCCTGAACTTTCTGCAGA
AGTACCCGGAGTACGATGGACGCGACGTCACCATAGCCATCTTCGATTCC
GGCGTCGATCCCCGGGCAACGGGACTGGAGACGCTGTGCGATGGAAAGAC
CGTTAAAGTAATAGAGCGGTACGACTGTTCCGGATGCGGCGACGTGGACA
TGAAGAAGAAGGTGACGCCGGACGAGAACGGCAACATTAAGGGCCTGTCC
GGAAACTCGCTCAAGCTGAGTCCGGAGCTGATGGCTCTGAACACAGATCC
GGAGAAGGCGGTGCGGGTAGGCCTCAAGAGCTTCAGCGATTTGTTGCCCT
CCAAGGTGCGGAACAACATTGTGGCCCAGGCCAAGCTGACGCACTGGGAC
AAGCCGCACAAGACGGCCACTGCAAACGCCAGTCGCAAGATTGTTGAATT
TGAGTCACAAAATCCAGGAGAAGCCTCAAAACTGCCCTGGGACAAGAAGA
TATTGAAAGAGAATCTAGACTTTGAGCTAGAGATGTGAATAGCTACGAGA
AGTGTACGGCGACATTAAGACCTCCTACGATTGCATCCTTTTCCCACGGC
CGACGGATGGCTGACATCGTCGACACCACGGAGCATGGTCGATCTGGATC
AGCTCTGCGCATTGGCGAGTTATCCCGCACGCACCGAGACCCGCATGGGA
CGACTTTCTTCCATATTCGTAAACCGTCACGACGAGGCAACGTACTGGAA
GTGTTCGCATGACTCAACCCAGAACCACGTAT
FMO12518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TppII-RD | 4641 | CG3991-RD | 207..1282 | 5..1071 | 4885 | 97.8 | Plus |
| TppII-RE | 4350 | CG3991-RE | 19..928 | 171..1071 | 4055 | 97.4 | Plus |
| TppII-RF | 4375 | CG3991-RF | 107..1016 | 171..1071 | 4055 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13157495..13157834 | 768..429 | 1685 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13158020..13158279 | 430..171 | 1300 | 100 | Minus |
| 2R | 25286936 | 2R | 13158767..13158935 | 173..5 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 13157140..13157439 | 1057..765 | 815 | 92.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:29:41 has no hits.
FMO12518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:33 Download gff for
FMO12518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 153..1231 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:50 Download gff for
FMO12518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 204..1282 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:06 Download gff for
FMO12518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TppII-RD | 204..1282 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:06 Download gff for
FMO12518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13158767..13158936 | 1..173 | 98 | | Minus |
| 2R | 13157124..13157436 | 768..1071 | 92 | <- | Minus |
| 2R | 13157496..13157832 | 431..767 | 99 | <- | Minus |
| 2R | 13158020..13158276 | 174..430 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:50 Download gff for
FMO12518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9046272..9046441 | 1..173 | 98 | | Minus |
| arm_2R | 9044629..9044941 | 768..1071 | 92 | <- | Minus |
| arm_2R | 9045001..9045337 | 431..767 | 99 | <- | Minus |
| arm_2R | 9045525..9045781 | 174..430 | 100 | <- | Minus |
