Clone FMO12519 Report

Search the DGRC for FMO12519

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:19
Vector:pMK33-CFH-BD
Associated Gene/TranscriptATPCL-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12519.5prime Sequence

1093 bp (993 high quality bases) assembled on 2012-10-30

> FMO12519.5prime
AGTCGACATGTCGGCGAAAGCAATCACCGAGGCCTCCGGCAAGGACATCC
TGAACCGCCATCTCAACACCCATGGCGCCGGCGCGGCCACTTGCCGTTTT
TCCACAGTAAATTCCACGACAGATTGGTCCAAGCTCGCCGTTGACCATCC
CTGGCTGCTGACCACGCCGCTGGTGTGCAAGCCCGATCAACTTATCAAGC
GCCGTGGAAAGCTGGGACTAATTGGCGTCAAGAAGAACTTTGAGCAGGTG
AAGCAGTGGATTGGCGAGCGCCTCAACAAGGACCAGAAGATCGGAAATGC
CGTGGGAAAGCTCAGGAACTTTATCATCGAACCTTTTGTGCCCCACACCG
ATGCTGAGGAGATGTACGTGTGCATCTACTCGCACCGCGCCGCAGACACC
ATTCTGTTCTACCACCAGGGTGGCGTGGATATTGGCGATGTGGATGCTAA
GGCCGTGAAGTTGGACGTACCTGTGAACTCTTCTCTGTCGTTAGCCGACG
TGAAGAGCAAGCTGTTGAAGGAGGTCAAGGACGCGGGCACCAAGGAGCGC
ATTGCCAAGTTTGTCAGCGCCTTGTACACGACCTATGTAGACCTGTATTT
CACATATCTGGAGATTAACCCTCTGGTGGTGACAGCCGACAATTTGTACA
TCTTGGATTTGGCGGCCAAGTTGGATTCGACAGCTGATTTCATCTGCCGT
CCCAAATGGGGCGAGATTGACTATCCACCTCCGTTTGGTCGAGATGCATA
TCCCGAGGAGGCCTACATCGCCGACTTGGACGCCAAGAGTGGAGCTTCGC
TGAGCTGACGATCCTTAATCGTAATGGTCGTATCTGGACGATGGTGGCGG
GCGGTGGCGCCAGTGTCATTTACTCGGACACCATCTGCGATTTGGGTGGA
GCCTCCGAGCTGGCCAATTATGGCGATACAGTGGGGCTCAATCGGAACAG
CAGACGTACGAGTACGCAAAGACGATTCTCAAACTGATGACCTCCTCGCC
AAAGCATCCCGATTGCCAAGTGCTGATTACCGGAGGGGCATTGCTACTTA
CATGTGCTGCGACCTCAGCATCTACCGCCTTGCGAACTCAGCG

FMO12519.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
ATPCL-RF 3913 CG8322-RF 200..1240 7..1044 5070 99.3 Plus
ATPCL-RE 4146 CG8322-RE 110..1150 7..1044 5070 99.3 Plus
ATPCL-RD 3874 CG8322-RD 110..1150 7..1044 5070 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15997316..15998003 1038..353 3280 99.1 Minus
2R 25286936 2R 15998066..15998253 353..166 940 100 Minus
2R 25286936 2R 15999805..15999964 166..7 800 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:29:48 has no hits.

FMO12519.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:34 Download gff for FMO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPCL-RF 191..1243 1..1049 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:56 Download gff for FMO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPCL-RD 103..1156 1..1049 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:10 Download gff for FMO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPCL-RD 103..1156 1..1049 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:10 Download gff for FMO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15997303..15998003 353..1049 98 <- Minus
2R 15998067..15998252 167..352 100 <- Minus
2R 15999805..15999966 1..166 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:56 Download gff for FMO12519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11884808..11885508 353..1049 98 <- Minus
arm_2R 11885572..11885757 167..352 100 <- Minus
arm_2R 11887310..11887471 1..166 97   Minus