FMO12520.5prime Sequence
1063 bp (925 high quality bases) assembled on 2012-10-30
> FMO12520.5prime
AGTCGACATGGACCCGTTTACTCAGCACATGCTCGAGAAGGCGGAACAGC
GCAGTCGCGCCCTTGGCATCAGCAATGCCAGCAAATTTCCGCTCGTCGAG
TGCAGCGTTCCAAGCTCCTCCGCCACCTCCGCATCCGGCGGGGATGCTGG
GGTCCTGGCACCGAGGAGCCGGTCGCCTGGAGGCCAGAGCGCGGCTAGCG
GCGGCGGCAAGGTCGTTACGTTGGGAAAGGCCACGCTGGAGGCGTCGCCG
GCGAAGCCGCTGCGTCACTATACGGCGGTAAACAAGGAAAACTTGGATAT
GGGCATAGAGATAAACATAACCACGGACAAGCCAATTGGGGTGCAAGTTG
AGATTCAGGAGCAGGAGGTGACAGATGACGAAGAGCAGGCGGAAGGAGGT
GCGCTAAATCCCCTGCTGGAGGCGGAACCAGTAAACCAGCCCCTAGCTTT
TCTAAGGGACACTTCCCGCAGCCGACTGCAACGCATGGGTGCCCTGTACT
CAAACACGGACGATCTATCCTCCCCAATCCACCGAACCGAGGGGCAGTTC
CATGTGACAACGGGTGAGGAAGAGGACTGCGGCAACCGTAGCAGCAGGCA
ACCAAAACAACGGTTGGGCAAACTGGCCGCCTTGGCGGATACCATCAATC
AGTGGGAGGATGACACGTCGCACCACGAAGTGCACAGACTGCTCGAAGCA
CCTCCACCGAAACCGCATTTGTCCAGTCGAATGGCCGAGAAAGGGTCCAG
CTCCACTGCCACCCAAGAATGATGAAGTCGACGAGGCAAGCAGACCAAGC
AGCTGAAGTGGGATCCCAAGGTATTGAGCTCTCTGGAGGCACAACGTTTT
CAGCGCCGCGAATCATCGACCATTAACACACATATGATTATGCCAAACAG
GAGGAGGCGGCCCCAGCCTCCAAAGTGTAGATGCGTTATTTACTGCCCAG
CCGCCAGTGCCGCAGAATTCACGAACGGTCAGCCAAGTCGCCAAGAACTT
TTGCAATCCTCCGCCCCCACGCCTAAGCCCGCAACCATCGCTTCTGTTAG
ATGGTGAGTTCTG
FMO12520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scra-RC | 2260 | CG2092-RC | 326..1368 | 8..1050 | 4705 | 97.2 | Plus |
| scra-RB | 4311 | CG2092-RB | 326..1368 | 8..1050 | 4705 | 97.2 | Plus |
| scra-RA | 4147 | CG2092-RA | 243..1056 | 8..821 | 3935 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7590945..7591638 | 340..1033 | 2890 | 96 | Plus |
| 2R | 25286936 | 2R | 7590565..7590884 | 23..342 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:45 has no hits.
FMO12520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:35 Download gff for
FMO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RC | 319..1370 | 1..1053 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:22 Download gff for
FMO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RB | 319..1370 | 1..1053 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:15 Download gff for
FMO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RB | 319..1370 | 1..1053 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:15 Download gff for
FMO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7590568..7590882 | 26..340 | 100 | -> | Plus |
| 2R | 7590946..7591657 | 341..1053 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:22 Download gff for
FMO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3478073..3478387 | 26..340 | 100 | -> | Plus |
| arm_2R | 3478451..3479162 | 341..1053 | 95 | | Plus |
