FMO12523.5prime Sequence
1079 bp (981 high quality bases) assembled on 2012-10-30
> FMO12523.5prime
TCGACATGGCACCAACAATCACTGACAATTGCGAATTTGAATGTGCAACT
GTTGAGGCAACAACAACATCAGCGATTACCATCGGTGATTCCGATAATTT
CGATAGTTCGGCCATTGGTGGCAGCGGCGATAACTTCGAAGAATCGAATG
AACTGCATTTGAACGGACAGCAGGATCAGGATGTTCAGGAGGAGCAGCAG
CAGCAAATGCCATGGGAGGCACCTGGAAAACAGGGACTCTACGATCCCCA
GAACGAGCACGAGGCCTGCGGAGTCGGTTTTATCGTGGCCATCGATGGCA
AACGCTCTCACAAGATTCTACGTGATGCCCAGACCCTCTCAGAACGGATG
AATCACCGCGGCGCCTGCGCCTGCGACAATGACACCGGCGATGGCGCTGG
CGTCTTGGCTTCCATTCCTCACGGACTCTACTCGAAGGCTCTTGCCAAGC
AGGGTGTAACCTTGCCGGAGTTGGGTGACTATGCCACGGGCATTTTCTAC
CTGGATGAGGCTCAGCATGCAGCTGCCGAGAAGGAGTTCGATGATCTGGC
CAAGAGTCTTGGATTGGAGGTGATTGCCTGGCGCACTGTGCCGTCCAATC
AGTCGGCCATTGGCGTGGTGGCCCGCAAGTCGGAACCCCTGTCCCGTCAG
GTGTTTGTGCGTCGTCCAGCCGGAAGCGATGAGAAGGCCTTCGAACGGCA
GGTTTTCGTCCTTAGGAAGAGGGCCAGCCATGAGTTGATCAAGCCGGGGC
GACGGTTCTACATCTGCTCCCTGTCCGATCGCACAGTGGTCTACAAGGTC
TCTTCACTTCCGACCAGCTGTGGGATTACTACACTGACCTGAAAGATCCA
GAGTTCGAAACCTATTTGGCATTGGTCCATACTCGTTTCCTCCACCACAC
TTTCCCAGTTGGGAAAGGCTCATCCTCTGCGAGTCCTGTCCACATGGTGA
GATCACACGCTTCGGGAAATGTGAACTCATGAAGGCCGCGAGGTTCATGC
AGTCGATTTGTATGGGATCACTGAGACCTGTACCAGTGTGGAGCCGATCT
CTCGATCCGCAGCTCGAATTGGGTCTGAA
FMO12523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9674-RH | 7274 | CG9674-RH | 252..1318 | 6..1053 | 4740 | 97.6 | Plus |
| CG9674-RG | 7436 | CG9674-RG | 252..1318 | 6..1053 | 4740 | 97.6 | Plus |
| CG9674-RF | 7465 | CG9674-RF | 281..1347 | 6..1053 | 4740 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16795785..16796337 | 987..443 | 2265 | 96.9 | Minus |
| 3L | 28110227 | 3L | 16799484..16799792 | 314..6 | 1545 | 100 | Minus |
| 3L | 28110227 | 3L | 16799045..16799174 | 442..313 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6877 | 121..263 | 126 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2859 | 121..210 | 112 | 60.9 | Plus |
FMO12523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:28 Download gff for
FMO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RD | 355..1376 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:26 Download gff for
FMO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RF | 277..1298 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:39 Download gff for
FMO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RF | 277..1298 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:39 Download gff for
FMO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16795757..16796337 | 443..1011 | 97 | <- | Minus |
| 3L | 16799045..16799172 | 315..442 | 100 | <- | Minus |
| 3L | 16799484..16799794 | 1..314 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:26 Download gff for
FMO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16788857..16789437 | 443..1011 | 97 | <- | Minus |
| arm_3L | 16792145..16792272 | 315..442 | 100 | <- | Minus |
| arm_3L | 16792584..16792894 | 1..314 | 99 | | Minus |
