FMO12526.5prime Sequence
1102 bp (983 high quality bases) assembled on 2012-10-30
> FMO12526.5prime
AGTCGACATGAGACTGTTTCTGCTAGCCCTGCTGGCTACTTTGGCGGTAA
CCCAAGCGCTGGTCAAGGAGGAGATACAGGCCAAGGAGTATCTGGAGAAT
CTGAACAAGGAGCTGGCCAAGCGAACCAACGTGGAAACCGAAGCTGCCTG
GGCCTATGGCTCCAACATCACCGACGAGAACGAAAAGAAAAAGAATGAGA
TATCCGCCGAGTTGGCCAAGTTCATGAAGGAGGTGGCCAGTGATACCACC
AAGTTCCAATGGCGCTCGTACCAATCGGAGGATCTCAAGCGCCAGTTCAA
GGCTCTAACCAAACTGGGCTATGCTGCTCTACCTGAAGACGACTATGCCG
AACTGCTGGACACACTCTCCGCCATGGAGTCGAATTTCGCCAAGGTCAAG
GTGTGCGACTACAAGGATAGCACCAAGTGCGACCTAGCCCTCGACCCTGA
GATCGAGGAGGTCATCAGCAAGAGCCGTGACCACGAGGAGCTCGCCTACT
ACTGGCGCGAGTTCTACGACAAGGCCGGAACCGCCGTGCGATCTCAATTC
GAACGCTACGTGGAGCTCAACACCAAGGCAGCCAAACTGAATAACTTTAC
TTCTGGTGCCGAGGCCTGGTTGGATGAGTACGAGGACGACACCTTCGAGC
AGCAGCTGGAGGACATCTTCGCGGATATTCGTCCGCTTTACCAGCAGATC
CATGGCTATGTGCGTTTCCGCCTGAGGAAACACTATGGTGACGCGGTGGT
CTCCGAGACAGGACCCATTCCCATGCACCTATTGGGCAACATGTGGGCAC
AGCAGTGGTCAGAGATTGCGGACATCGTATCCCCCTTTCCGGAGAAGCCT
CTGGTGGATGTGAGCCCTGAGATGGAAAAGCAGGCTACACGCCACTCAAA
ATGTTCCAAATGGGGCGACGACTTCTTCACGTCTATGAATCTACCCAAGC
TGCCACAGGACTTCTGGGACAAGTCGATCATTGAAGAGCCCACCGATGGT
CGTGGATCTGGTTTGCCATGCCAGCGCCTTGGAAACTTTTATTCTCACCG
ACGAATGTGCGCATTCAGCAGTGCAACGTGTTACCATAGAATCAGTCTTC
AC
FMO12526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-RC | 2048 | CG8827-RC | 96..1188 | 6..1102 | 5065 | 97.9 | Plus |
| Ance-RB | 2062 | CG8827-RB | 152..1244 | 6..1102 | 5065 | 97.9 | Plus |
| Ance-RA | 2004 | CG8827-RA | 94..1186 | 6..1102 | 5065 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13906585..13907172 | 6..593 | 2925 | 99.8 | Plus |
| 2L | 23513712 | 2L | 13907599..13907963 | 594..958 | 1685 | 98.6 | Plus |
| 2L | 23513712 | 2L | 13908024..13908136 | 958..1075 | 300 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:13 has no hits.
FMO12526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:39 Download gff for
FMO12526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-RB | 75..1143 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:40 Download gff for
FMO12526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-RA | 90..1158 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:30 Download gff for
FMO12526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-RA | 90..1158 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:30 Download gff for
FMO12526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13906581..13907172 | 1..593 | 99 | -> | Plus |
| 2L | 13907599..13907962 | 594..957 | 98 | -> | Plus |
| 2L | 13908024..13908136 | 958..1075 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:40 Download gff for
FMO12526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13906581..13907172 | 1..593 | 99 | -> | Plus |
| arm_2L | 13907599..13907962 | 594..957 | 98 | -> | Plus |
| arm_2L | 13908024..13908136 | 958..1075 | 91 | | Plus |
