FMO12527.5prime Sequence
1111 bp (993 high quality bases) assembled on 2012-10-30
> FMO12527.5prime
AGTCGACATGGAGCTGAGCAACTTTTCGAGCGGCAAGAAGATGTCACGCG
AGGAGCGCCGCTACTCGGTGCCCCACGGACCCAATACCCCACTGCCACCG
GCGGCATCCGAGGATCTGCATGCCTGGTCCATCTACAGGCAAAACCTGAA
CTCTGACTTCACCGATTCAGCTCTGGGCTCGTCGGACAAATCACCGCTGC
CATATGGAAACTTCCAGCTACGCGATACCACAGTTCAATCAATCTTAAAC
CATCCGCGCTACGGACCCAAATCTCCCTTGGGCTCAAATATGTACACATA
CTTGAAGTTCGGACTGCCGCGCGTCTTTCCGCCAAATGCTGGATCGCAGC
GATCGCATCGTCCCGGTCCGGGTCCGGGTGCGGGACCGGGTCATGGCCAT
GGTGGTTCCAGTGCCCTGGGCGGAGTGCGAGGACGAGTGAACCGCGCTTT
TCGGGATAGCTCGGGTGCACCGGCTGGAGCCGGGAGCAGTGGCTACGATA
GCAGCGACAACGAGACGACCCGCAGTCGGGTGCCGCCCAATCTCCGGAAG
TATCGCAGCGAGTCCGACTTCCGTGCCATCGGCGGCATGCCGCACTCGCG
TCCTGAGTCGCGGGCTCAGATCGGAGGAGGCGGTGTCCCGATGGCTGCCC
TGCGGCAGGCAAACAGCCGAGCAAGCATCGCGGTGGGTCAGCACCACCAT
CAGATGCAGCAGCATCAACAGCAGTACGGGAAGCACTACGGTCACAGATC
GCACAGCGAGGCGGATCTTCTGGGGGCCGGATTGAGCCAGGTGGATGGCG
GCGGTGGTGGGATGGCTACGACTATAACGAAGCCCGACTGTACGGCAGCT
CCAGGCAGTACGGCAATGGAAACGGTCACAACCCTGCAGCAGAAGCAGTC
GGGCATGGGCTGATCTACCCAAACATCCAGTGCACTGCCTCGATGTGAAT
CCCTGCCTGGGCGGTGTGTCGATGCAAGCCAAGGCGGGGGATCTTGTTCG
CATCATGCCACATCCAAAGAGGACACTTGCCACTTGAGTCCGATGCTGCG
GATTGACTGAACGTCTTGGTTAGGGAATTCCTCATCAACGGACGCAGTAG
TCGATGGAACT
FMO12527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31121-RB | 3136 | CG31121-RB | 264..1371 | 7..1104 | 4850 | 96.8 | Plus |
| CG31121-RA | 3296 | CG31121-RA | 424..1531 | 7..1104 | 4850 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24883624..24884352 | 994..271 | 3350 | 98.9 | Minus |
| 3R | 32079331 | 3R | 24884561..24884694 | 270..137 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 24885007..24885139 | 139..7 | 665 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 649..751 | 735..626 | 155 | 67 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1110 | 689..726 | 127 | 81.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2420 | 689..759 | 122 | 68.5 | Plus |
FMO12527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:39 Download gff for
FMO12527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31121-RB | 255..1256 | 1..994 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:45 Download gff for
FMO12527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31121-RA | 419..1416 | 1..994 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:34 Download gff for
FMO12527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31121-RA | 419..1416 | 1..994 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:34 Download gff for
FMO12527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24885008..24885141 | 1..138 | 97 | | Minus |
| 3R | 24883624..24884352 | 271..994 | 98 | <- | Minus |
| 3R | 24884561..24884692 | 139..270 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:45 Download gff for
FMO12527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20709346..20710074 | 271..994 | 98 | <- | Minus |
| arm_3R | 20710283..20710414 | 139..270 | 100 | <- | Minus |
| arm_3R | 20710730..20710863 | 1..138 | 97 | | Minus |
