FMO12528.5prime Sequence
1089 bp (957 high quality bases) assembled on 2012-10-30
> FMO12528.5prime
AGTCGACATGATAATTTCCAGCCAACCGAATTTGGCTGGATCGGCGACGA
CCACGACCACCACAACCATCAGCAGTGCCCATGTGAGCCAGGAGGGTACC
ATGCCACTGCCGTTGCCTATTCCCGTAACCATGCCCCTTCCCAACGCCGG
CACTTGCAACTGCGGGGCAGTTGGCGTGGGCGTGGGCGTGGGAATGGGAA
TGGCCCTGGGGGCCAGACAGTGCCCATCTCCAGCCGTGGATCCGACGACA
GCAACGGCCACACCCACGTCCACGACACCAGGCAGAGATTCATTAACGCG
TCCGGCCTCCGAGTCCGAGCTGAATGTGGGCACAGGCACATCGGGCACCA
GTTCATCCGGCGGGAACAGCCGTCCAGGTCACCGCAAGTCATCACTAGCC
CTCGCTCTCACCCCGGAAGATGAGCCGATGGACGTCTACCAGCGAAATCT
CATGGACCTGAAGTATCCAACCGTGCTACCACCGAATCCCCCACTTAAGG
CCCTTCTGGTTTTCCACAAGTCGGACAGCATCTGCGAGGCGATCACCGCG
GCCTGCCAGCGCCACCAGCTGGACGTTACGCTGGTCAAGTCCAAGGAGGA
GGCCCTGGACACTCTGCAGAAGTCGTACGCCACCGCCCAGTGCTACCACC
TAATCATAATTGATGCGCGCTCCTCCAAGAACCTGGATGCGGAGCACATT
GCGAGAACCATTCGTCACACACACGGCCACCATTTAACGACAATAATTGC
AGTCTGCAAGAAGAGTTTCTTCGAAAAGGATGATGTGCTAATTGCTCTAT
TGGACGCTGGCGTTAATAGATGCGTAGCGGAGACGACCAACCTGCCCATG
TGCAGTGTGAACTGAAGCAGATACTGCACTCCATCATCCGGCCGCACAAT
TGTCATGTCCAACTCAACAGGCCTTCTTACACCGCTCTGCATCGGCCTAA
GGAGGTGGTGCTTCATCACGACGACTTGCTGGCGAATTCAGTAACGCGTA
CCGTGGCACCGAAAGGCTGCTCCACCTGGCGCTGACGAGATCATTAGCAG
GCAGCTGGAAGACTATTTTGTGTCCGGACTCTTCACACT
FMO12528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pde8-RB | 4331 | CG45019-RB | 289..1352 | 8..1074 | 4855 | 97.6 | Plus |
| Pde8-RK | 5389 | CG45019-RK | 842..1583 | 330..1074 | 3245 | 96.5 | Plus |
| Pde8-RI | 5562 | CG45019-RI | 1015..1756 | 330..1074 | 3245 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23670056..23670378 | 8..330 | 1615 | 100 | Plus |
| 2R | 25286936 | 2R | 23674412..23674619 | 498..705 | 1040 | 100 | Plus |
| 2R | 25286936 | 2R | 23671975..23672088 | 329..442 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 23675107..23675197 | 821..911 | 345 | 96.7 | Plus |
| 2R | 25286936 | 2R | 23674802..23674863 | 704..765 | 310 | 100 | Plus |
| 2R | 25286936 | 2R | 23674283..23674343 | 440..500 | 305 | 100 | Plus |
| 2R | 25286936 | 2R | 23674929..23674985 | 764..820 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:24 has no hits.
FMO12528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:40 Download gff for
FMO12528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde8-RB | 375..1351 | 1..981 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:48 Download gff for
FMO12528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde8-RB | 284..1260 | 1..981 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:37 Download gff for
FMO12528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pde8-RB | 284..1260 | 1..981 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:37 Download gff for
FMO12528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23674804..23674863 | 706..765 | 100 | -> | Plus |
| 2R | 23674931..23674985 | 766..820 | 100 | -> | Plus |
| 2R | 23675107..23675205 | 821..920 | 96 | -> | Plus |
| 2R | 23670051..23670377 | 1..329 | 98 | -> | Plus |
| 2R | 23671976..23672088 | 330..442 | 100 | -> | Plus |
| 2R | 23674286..23674342 | 443..499 | 100 | -> | Plus |
| 2R | 23674414..23674619 | 500..705 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:48 Download gff for
FMO12528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19557574..19557900 | 1..329 | 98 | -> | Plus |
| arm_2R | 19559499..19559611 | 330..442 | 100 | -> | Plus |
| arm_2R | 19561809..19561865 | 443..499 | 100 | -> | Plus |
| arm_2R | 19561937..19562142 | 500..705 | 100 | -> | Plus |
| arm_2R | 19562327..19562386 | 706..765 | 100 | -> | Plus |
| arm_2R | 19562454..19562508 | 766..820 | 100 | -> | Plus |
| arm_2R | 19562630..19562728 | 821..920 | 96 | -> | Plus |
