FMO12529.5prime Sequence
1083 bp (983 high quality bases) assembled on 2012-10-30
> FMO12529.5prime
AGTCGACATGGCCGAATTAATCAGTCAGCCCACTAAAATTAACAACAATA
ATTTTGGTGCCGGCGTCACAATGCGCGAGAAAAAGGGAGGAGCCCTTCAG
AAGCTCAAGAAGAGACTTTCGCACAGCTTCGGCAGATTAACAATTTCCCG
CGAAGATGGCGACGAGTCGACGCACCACCATCACCACCACCATCATCATC
GCGGTGGACATGGCGGGCACCACAACCACGGTAACAAAGTTCCATACAAC
GGCTACAATTCGGAGGAATACTTGGACCGACTCGAACCGAATGGCAATAT
ACCCGCTGACAAGACAAATTGCAGATATGGAGACTGGCGCAGCACGGACA
GCACCGACCACCACGATCGCGTCCAGAGACAGCTTTCCGTGTCCTCCGAC
AGCAAGTTGCTCGACGAGGACATTCGCGAGGAGATGAAGTACCATTCGCA
CGTGTTCATGCGTCCCAAGAAGCCGCCCAGACCCAAATCCGAGGTCTTTC
TGAACAAACAGGAAACGCATCCGCGCCGGAAACGATTCAGTGCATTTGGT
GGCGACTCCCCATTTGGCAAGCAGGAGGCCTATGTTAAACTCGAGCCGCT
GGGCGAAGGCTCCTATGCGACGGTCTACAAAGGATTTAGCAAATTAACCT
ACCAGCGGGTGGCGCTGAAGGAGATTCGCCTGCAGGAGGAGGAGGGAGCA
CCCTTCACCGCGATTCGCGAGGCCTCGCTGCTGAAAGAACTGAAACACAG
CAACATCGTCACGCTGCACGACATTGTCCACACGCGCGAGACGCTGACCT
TTGTCTTTGAATATGTGAATACGGATCTGTCGCAATACATGGAGAAGCAT
CCGGGCGGCCTGATCATCGCAACGTGCGCCTGTTCCTCTTCAGCTGCTCC
GTGGACTCTCCTACTGCACAGCGGCGTGTCCTCCATCGGGATGTCAGCCG
CAGACCTGCTTATTACGACTGCGCGAACTGAAGTGCGATTCGACTGCCAG
GGCCAGAGCGTGCCCAGCCACACCCTACTCCCCACGGAGGGTGGTCAAGT
TATGGTACCGCCCCTCGAATGTTCTCGCTTGGC
FMO12529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eip63E-RC | 2891 | CG10579-RC | 377..1445 | 6..1063 | 4870 | 98 | Plus |
| Eip63E-RB | 2919 | CG10579-RB | 405..1473 | 6..1063 | 4870 | 98 | Plus |
| Eip63E-RA | 2700 | CG10579-RA | 186..1254 | 6..1063 | 4870 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3593327..3593547 | 331..551 | 1090 | 99.5 | Plus |
| 3L | 28110227 | 3L | 3578289..3578480 | 141..332 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 3598061..3598239 | 639..817 | 880 | 99.4 | Plus |
| 3L | 28110227 | 3L | 3598359..3598534 | 817..984 | 485 | 94.3 | Plus |
| 3L | 28110227 | 3L | 3594651..3594742 | 551..642 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 3552786..3552864 | 62..140 | 395 | 100 | Plus |
| 3L | 28110227 | 3L | 3546075..3546132 | 6..63 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:30 has no hits.
FMO12529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:41 Download gff for
FMO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip63E-RK | 369..698 | 1..332 | 98 | -> | Plus |
| Eip63E-RK | 739..1495 | 333..1079 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:53 Download gff for
FMO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip63E-RA | 180..1269 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:40 Download gff for
FMO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eip63E-RA | 180..1269 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:40 Download gff for
FMO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3593329..3593546 | 333..550 | 99 | -> | Plus |
| 3L | 3594651..3594742 | 551..642 | 100 | -> | Plus |
| 3L | 3598065..3598239 | 643..817 | 100 | -> | Plus |
| 3L | 3598360..3598623 | 818..1072 | 91 | | Plus |
| 3L | 3546071..3546131 | 1..62 | 95 | -> | Plus |
| 3L | 3552787..3552864 | 63..140 | 100 | -> | Plus |
| 3L | 3578289..3578480 | 141..332 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:53 Download gff for
FMO12529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3598360..3598623 | 818..1072 | 91 | | Plus |
| arm_3L | 3546071..3546131 | 1..62 | 95 | -> | Plus |
| arm_3L | 3552787..3552864 | 63..140 | 100 | -> | Plus |
| arm_3L | 3578289..3578480 | 141..332 | 100 | -> | Plus |
| arm_3L | 3593329..3593546 | 333..550 | 99 | -> | Plus |
| arm_3L | 3594651..3594742 | 551..642 | 100 | -> | Plus |
| arm_3L | 3598065..3598239 | 643..817 | 100 | -> | Plus |
