FMO12530.5prime Sequence
1088 bp (976 high quality bases) assembled on 2012-10-30
> FMO12530.5prime
GTCGACATGATGTTCACACGTGCCCAGGTGCGCAAACAGAAGACCAGCAA
TTCGAGCAGCCAGCGACCTCGGAGCTCGGGAGGATCGACCCGCCATGAGA
CACGCTACAAACAGAGCTCCACCAGCAGTAGTGGAGCAGGCAGTGGCTTA
AGTGGCGCCAGTGGAGCCTCCGGCGCCCGAAGGGATCAGTACCGGGACAG
GGATCACTATGGAAAGCATTCCTTTGAGCTGCCACGCCAGCACTCCAAGG
AGGAGGCCTATCATCGAGATCGGGAGAGCAGTGCGGGTGGTGTCGACAGG
GGCGAAAGGAGTGGCATTGGTGGCAATGGTGGTGGCGTCACCGGCGGTGG
CGTCTACGTGGACAGAAGGACTCGCCCGAGGAGCATAACCAATCGACGCG
GGGCCATCAAGCATCAAAAAACCCACGACATCAATGGTCATCGTTTTGTG
GCCAAATTCTTTCGCCAGCCCACCTTTTGTGCCTTCTGCAATTTGTTTCT
CTGGGGATTTGGCAAACAGGGCTATCAGTGCATAATTTGCCAAACGGTGG
TGCACAAAAAGTGCCATGACAAGCTCCTGGGCAAATGTTCCGGTTCCGTC
TTCACCTCAGCCAGTACAATTTTACTACGCGAACGTTTCAAGATCGATAT
GCCACATCGGTTTAAGCCACACACTTTTATGTCGCCGACTTTTTGTGACC
ATTGCGGCTCATTAATGGGTGGATTTTTTATTCAGGGCCTCAAATGCGAA
GAATGTGACGTGAATTGTCACAAGAAATGCGAACGGCTCACGGCCAATTT
ATGCGGTGTCAATCAGAACTCATCGTTGAGGCACTCAACCACGTGAAGCG
AGGAGCCCGAGAGCCCGTGACTCACCCAGCACTCCGCCCAGTTTGATCCA
GCCTATAAAATCGAGGCAGCGAGAACACGATGAAACATCATATTACATAT
CACAATTCCAAAATCCGGACGTTTCACTGGCGCCAGCAACAGTAATACCT
AGATTTAAGAATTATTTCGGTGAATGATTCCACTTTCTGACGTCTTGGGC
AAGAGGTTTCGGCAAGTTTGCTTGCTGGACTGCTGACC
FMO12530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkcdelta-RD | 3043 | CG42349-RD | 669..1749 | 7..1077 | 4925 | 98 | Plus |
| Pkcdelta-RC | 3219 | CG10524-RA | 845..1925 | 7..1077 | 4925 | 98 | Plus |
| Pkcdelta-RE | 6288 | CG42349-RE | 4844..4994 | 932..1077 | 400 | 89 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12436011..12436332 | 98..419 | 1610 | 100 | Plus |
| X | 23542271 | X | 12436858..12436987 | 622..751 | 650 | 100 | Plus |
| X | 23542271 | X | 12436538..12436653 | 420..535 | 580 | 100 | Plus |
| X | 23542271 | X | 12450283..12450387 | 750..853 | 475 | 99 | Plus |
| X | 23542271 | X | 12435252..12435344 | 7..99 | 465 | 100 | Plus |
| X | 23542271 | X | 12436712..12436797 | 536..621 | 430 | 100 | Plus |
| X | 23542271 | X | 12450793..12450861 | 851..917 | 245 | 97.1 | Plus |
| X | 23542271 | X | 12451091..12451157 | 950..1016 | 240 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:35 has no hits.
FMO12530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:42 Download gff for
FMO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RD | 618..1678 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:57 Download gff for
FMO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RC | 839..1899 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:44 Download gff for
FMO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RC | 839..1899 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:44 Download gff for
FMO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12435246..12435344 | 1..99 | 95 | -> | Plus |
| X | 12436013..12436332 | 100..419 | 100 | -> | Plus |
| X | 12436538..12436653 | 420..535 | 100 | -> | Plus |
| X | 12436712..12436797 | 536..621 | 100 | -> | Plus |
| X | 12436858..12436987 | 622..751 | 100 | -> | Plus |
| X | 12450285..12450386 | 752..852 | 99 | -> | Plus |
| X | 12450795..12450878 | 853..932 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:57 Download gff for
FMO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12329279..12329377 | 1..99 | 95 | -> | Plus |
| arm_X | 12330046..12330365 | 100..419 | 100 | -> | Plus |
| arm_X | 12330571..12330686 | 420..535 | 100 | -> | Plus |
| arm_X | 12330745..12330830 | 536..621 | 100 | -> | Plus |
| arm_X | 12330891..12331020 | 622..751 | 100 | -> | Plus |
| arm_X | 12344318..12344419 | 752..852 | 99 | -> | Plus |
| arm_X | 12344828..12344911 | 853..932 | 95 | -> | Plus |
