FMO12531.5prime Sequence
1074 bp (967 high quality bases) assembled on 2012-10-30
> FMO12531.5prime
AGTCGACATGGTGAATGTACCACCGCTGCTCTGCAGCACCCCCCCGCCCA
TCGATTTTGGTGAGGAAGACGACGATTCCGGTTTACAATCCACCATCCAT
TTGGACGAGGGTGACGAATACTCAGATTTTGGCTTAGTCAGCAGCTCGAA
AGAACCCCCTCCACCACCAGATCCCGTGGAGGAATTTCGAGAAAAGCCAC
CTGATTTGCTGGAAGACAAACAAACCGTCGAGGCATTTAATTACCAGGTG
AAACAGAAGATGGATTACGATGTTTTCGAGGAAACAGCACCGCCGACGCC
GCCTCCGTTGAGCTTGGAACTGGATGATGAGGAACTGGAGGAGCATGTGC
CCTCCCTTAAGTTGGACAGTCTAAGTCTCTATTCCACGGAAAGCGTTTCT
GCCGCCTCCACACTCTCACCGGTTGCGGAGACTAGTGCAGTTGCTCCGCC
GGCTATGCAAACAACCAAAGCCCATATCCTCAGCCACCAAGTCACGCTGG
AGGATGTGTCCGATGACAGCGACGAGGAGTGCTCGCCAAAGAAGCCCAAA
GAACTATTTATACGCGAGGGAGCTGTGGATTTCTTTGCCATAGAGGTATT
GGCCACTCCAACCCTACCATATGGAGAAGGCTTTTCGGAGGAGAATGTGG
ATACAGGGAAAGGAGAATACGTAGAGAATACCTCCCAGCCAGAAGAAAGC
TTTAGAAGTTTGGAAGCCCAGGAGGAAAGTTCAAATACCTTAGAAAAGCC
TATGGAAAATCAAAGCCGTGGCTTATCAAATCCTCCAAATCAGGAGGAAT
CCCCTCACCAATGGGGTGAACCAGCAATAGTGATACATATTCATTTACAA
ATCTTGATGCGACGCCAAAAGACTTAGTACACAAAGAAATTGTCCCGAAA
TGCAGAGCAGAGATGATGATGACTTCTGTGACTTTGCGGATTCCTCAGCA
GCAGACCCAACTAGAATCACGGAGATTCACGTCTGCTTTGAAACCCTCTA
GCATCATCCCGACCGAATCTCACTCTAAGTAGACGCTCTAACAGAAGATC
TCTAGTTACCTCGTGCGAACGAGT
FMO12531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Afti-RB | 3923 | CG8538-RB | 409..1403 | 8..991 | 4680 | 98.7 | Plus |
| Afti-RD | 5111 | CG8538-RD | 409..1403 | 8..991 | 4680 | 98.7 | Plus |
| Afti-RC | 4225 | CG8538-RC | 409..1403 | 8..991 | 4680 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14325271..14326080 | 955..151 | 3790 | 99 | Minus |
| 3R | 32079331 | 3R | 14326137..14326281 | 152..8 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:20:08 has no hits.
FMO12531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:31 Download gff for
FMO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8538-RB | 402..1403 | 8..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:01 Download gff for
FMO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Afti-RC | 409..1410 | 8..997 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:57 Download gff for
FMO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Afti-RC | 409..1410 | 8..997 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:57 Download gff for
FMO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14325271..14326075 | 156..955 | 99 | -> | Minus |
| 3R | 14326132..14326281 | 8..155 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:01 Download gff for
FMO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10151854..10152003 | 8..155 | 98 | | Minus |
| arm_3R | 10150993..10151797 | 156..955 | 99 | -> | Minus |
