FMO12532.5prime Sequence
1082 bp (965 high quality bases) assembled on 2012-10-30
> FMO12532.5prime
AGTCGACATGGATGCCATCAAGAAGAAGATGCAAGCGATGAAAGTCGACA
AGGACGGAGCTCTGGAGCGCGCTCTCGTCTGCGAGCAGGAGGCACGCGAT
GCTAACACCCGCGCCGAGAAGGCCGAGGAGGAGGCTCGCCAGCTGCAGAA
GAAGATCCAGACCGTTGAGAACGAGCTGGATCAGACCCAGGAAGCCCTGA
CCCTGGTCACCGGCAAGCTGGAGGAGAAGAACAAGGCTCTGCAGAACGAA
AGTATTTCAAGGACATTTGGCATCGTTTCAAAAAGATCTCAGCAGGTAAA
GCGCTTGGAAAATTTATCGCTGGGAGTGGATCCACAAGAAAAAACACAAG
TGCAGCCGCAGTCGGGCAAAACAGTTGCCAAACCGAAACAGAGGCAGCAG
AAACAATTGTTCAAAAGTGATAAGGCGAAGGAGAAGTCCAGCAGGCAGTA
GAGAAAGCGAGCCGGCACCAGGAGCACTCGCAATCCGAGGACGCAATCGG
AATCTTCGGGCCTGTCATCCCGTTGGTGTTCCATCGAAGAGCAGTTGAAC
CTGCTGGACGACCTGCTCTACTACTGCGATGAGGAGGCCGAACTGTATCT
AGCCCAGCTGTACGAAAGGTTCGAGACACTCCGGCGTAGCAGGAGTTCCT
CGCCAGTGAGCGATTTCTGGAGCGATTCCGACATGGAGCACGATGACTCC
AGCACCAGTGGCACTGGCAGCCATACAGCCAGCAATACCAGTCTAGTTCC
CGCCTCGCTGAAGCGTCGTGGCCCACCAGCATCATCCGCGATTCTCGGGC
ACTCGCCGTCCCAATGTGCCCAATGTCCAGGAGATTCTGGCCGCACTCTA
TCGTGGCGACTCAAGAGCGCCCTGTCCAATCTGAGAGGAGAGACGCACCG
GAGAGGAGCACCACAGCAGCAGACTGAGAGTGCTGCCACCCAGCAGAAGC
ACTTAAGCTGCCCTCAGTGATCGTGACCATTCCTTGGCAGCAACAGTCCC
ACGCCCACAGACGAAGGCAAGCGTGCAGATGGAGGGGGCCAGTAATCCGG
CAGCAGCTTATGCTGAGATGCAGCCCACAGCA
FMO12532.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RE | 2531 | CG4898-RE | 88..1174 | 5..1076 | 4875 | 97.7 | Plus |
| Tm1-RC | 2651 | CG4898-RC | 240..994 | 337..1076 | 3215 | 96.7 | Plus |
| Tm1-RH | 3054 | CG4898-RH | 645..1397 | 339..1076 | 3205 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15288251..15288984 | 337..1059 | 2860 | 96.1 | Plus |
| 3R | 32079331 | 3R | 15285227..15285355 | 120..248 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 15284646..15284763 | 5..122 | 590 | 100 | Plus |
| 3R | 32079331 | 3R | 15286474..15286564 | 248..338 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:15 has no hits.
FMO12532.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:32 Download gff for
FMO12532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RE | 101..1194 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:05 Download gff for
FMO12532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RE | 83..1176 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:01 Download gff for
FMO12532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RE | 83..1176 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:01 Download gff for
FMO12532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15284641..15284762 | 1..121 | 97 | -> | Plus |
| 3R | 15285229..15285354 | 122..247 | 100 | -> | Plus |
| 3R | 15286474..15286564 | 248..338 | 100 | -> | Plus |
| 3R | 15288253..15289007 | 339..1079 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:05 Download gff for
FMO12532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11112196..11112286 | 248..338 | 100 | -> | Plus |
| arm_3R | 11110363..11110484 | 1..121 | 97 | -> | Plus |
| arm_3R | 11110951..11111076 | 122..247 | 100 | -> | Plus |
| arm_3R | 11113975..11114729 | 339..1079 | 96 | | Plus |
