FMO12533.5prime Sequence
1052 bp (960 high quality bases) assembled on 2012-10-30
> FMO12533.5prime
GTCGACATGTCCGACGAGGAGGAGGATTCCGTGTCCGAGGGCTTCTCGGC
CAGCGAGGATGAATGGAAGCCGAGCAAGGACGTCAAGGGAGGCGAGTCCT
CCGACGATGATGACAGCGATTTCGATGAGCTCCAGGCGGAGGGAGGAGCA
GCGGGCTCCAGTGGACGATCCTCCGCTGTAGCGGGAAAAAGAGGCGATCA
CAAGGCACCAAGTGGCATCAAGGGCTCTTCGGTGAAGAAACGCAAGCCCA
CTGGTCAATCACTTCGCTCCAAGCTGTACAATAAGTACCGACCGCCTCCA
AAGACCTTTCCCACTTCTCCTTCGCAACAGAAGGAGAACACTCCGCGGGC
TTCGGGTTCAAAAAACGCCAAAACGCCCAATGAAAGCGGTGCACGGAATC
AGCACGGTCCTGCTGATTCCAGCAGCGAATCCAGTGTGGAAGACTACTTA
GTAAATCCAGCCGATCTTGATCTGCACTCAACCTTCTTTGCCGGCGGCCA
AAAAGAGAAGTCACCGGCGCCCCAATTCGATTGTAATGCGGGCATCACAA
ATCTTTCAGACTCTGGATCGGAGGATAACAACGAGAGCAGCTTCGAGGAT
AAAGCAGGCAATGCCTTCGACTTTCGCGGTCTCCTGGAGAACGCAAACAG
TTTGGAGCGCACTAGGGATGCTTTAAGCAAACGAAATGTCACGGCCACTC
CGCCAAGGAGCCAGGCTGCCACCATGGATGTCAATGCGCTGCTTGCATTG
GGCGAGAACCAAAACTACCAGAGTGTGGAGGTGGAGGAACGTGAAGGGAA
TCAGCGTAAGGACGCGGGAAGAGGAGCACCAGCAGCGCCTCCGACCCTTT
GATGAACCGTCACGCCTCAGCAAGACGAGTCAACGCGAATAAAGCGACAC
ACAAGACGCGACCGTCTCACGTGTCGCCAACGCTGGTGATACTGATGACT
CCGATTTGAAGGAGTGGCAGATGCAGATCTATTCATGACCAGACGATGGC
AGACGCGAACATCTCTAAGGGAATTGAAATCGGTGGTACTGAAGGCTCCG
TT
FMO12533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus210-RA | 4275 | CG8153-RA | 271..1289 | 7..1015 | 4710 | 98.2 | Plus |
| mus210-RC | 4683 | CG8153-RC | 271..1292 | 7..1015 | 4670 | 97.9 | Plus |
| mus210-RD | 1390 | CG8153-RD | 271..1243 | 7..970 | 4540 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15312035..15312803 | 194..957 | 3475 | 98.6 | Plus |
| 2R | 25286936 | 2R | 15311780..15311967 | 7..194 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:25 has no hits.
FMO12533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:33 Download gff for
FMO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus210-RA | 290..1323 | 1..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:11 Download gff for
FMO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus210-RA | 266..1299 | 1..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:05 Download gff for
FMO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus210-RA | 266..1299 | 1..1026 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:05 Download gff for
FMO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15311775..15311967 | 1..194 | 97 | -> | Plus |
| 2R | 15312036..15312817 | 195..970 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:11 Download gff for
FMO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11199280..11199472 | 1..194 | 97 | -> | Plus |
| arm_2R | 11199541..11200322 | 195..970 | 98 | -> | Plus |
