Clone FMO12534 Report

Search the DGRC for FMO12534

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:34
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31343-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12534.5prime Sequence

1060 bp (961 high quality bases) assembled on 2012-10-30

> FMO12534.5prime
AGTCGACATGGCACGGTGGCTGCTTAACTCGTTTTCGCTGATCCTGCTCC
TGGCAGTGTGCAGCCTACAGGCGCGCCTGATCCTTCCCTTATCCCTGGAC
GATGGACAGCTGGAGACCAAGGGAGCAGCCCTCTTTGCCACCTCCCGCGT
GGATGATAATAGTGCCGGCAATTACCGACTGCCAAATACAACGGAACCGG
AGTCCTACAACGTGGAACTCTGGACCAATGTCCATAATGGCGATACCGAA
TTCAATGGCACCGTCAATATCGATATCCGGGTTTTGAACGAGACATCGAA
TATTACGCTTCACTATCGCCAGACGTCGAATTTTGAAGCGACGATTATCA
GCCGGGATGTGGCCACGCCCACGGCAATTCCACTCACTGTAACCCCCGAG
TTGCAGCGCGAATTCCTCGTCCTTACGCAGACCACCGCTGGTGATGCATT
TGGAGCCAACACCAACTGGACCATCACCATCAACTACACTGGCATCCACC
GATCTGATATGGGCGGTTTCTATATCTCCAGTTATACGGACGATGATGGC
GAACAGCACTTCTTGGCCACCACGCAATTCGAGAGCACAAACGCCCGTCA
CGCGTTTCCCTGTTACGATGAGCCTGCCCGTAGAGCTAACTTTACGATTA
CCATCCACCATGATCCCTCCTACACTGCCATCAGCAATATGCCAGTAAAC
ACCGCTGCCACCAGCTCGGGAGTCACTGCTTTCCAGACGACGCCCAAAGA
TGTCCACCTACCTGGTGGCCCTTCATCGTCTCCGATTTTGAGTCCACCAC
CGGAGAACTGAATGGCATCCGCCAGCGGGTTTTCTCGCGCAAGGGAAAGC
AGATCAGCAGATGGGCCCTTTGGTCCGGATTGCTGTGAGTCCAGTCTGGC
TAGCTACTTTGGGGTTCCCTTCGCCTGCCCAGCTAGATCAAGCTGGATAC
CGGACTTCTCTGCGTGCATGAGAACTGGGGTCTGGCCACTATCGTGAGCA
GTACATGTGGTGGACCAGCGGACTCCCGATCACTGGAAGCGAACTTGGCC
AAATATTGAA

FMO12534.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31343-RA 3004 CG31343-RA 38..1057 6..1014 4740 98.4 Plus
CG31233-RB 3059 CG31233-RB 657..1140 533..1008 285 73.6 Plus
CG31233-RA 2945 CG31233-RA 543..1026 533..1008 285 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21745303..21745855 6..558 2750 99.8 Plus
3R 32079331 3R 21746470..21746784 711..1014 915 94 Plus
3R 32079331 3R 21746186..21746341 559..714 780 100 Plus
Blast to na_te.dros performed 2014-11-28 18:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dtei\I-element 5386 Dtei\I-element DTEII 5386bp 1189..1233 450..494 117 73.3 Plus

FMO12534.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:37 Download gff for FMO12534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31343-RA 30..1075 1..1032 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:33 Download gff for FMO12534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31343-RA 33..1078 1..1032 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:25 Download gff for FMO12534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31343-RA 33..1078 1..1032 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:25 Download gff for FMO12534.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21745298..21745855 1..558 99 -> Plus
3R 21746186..21746341 559..714 100 -> Plus
3R 21746474..21746819 715..1044 93 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:33 Download gff for FMO12534.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17571020..17571577 1..558 99 -> Plus
arm_3R 17571908..17572063 559..714 100 -> Plus
arm_3R 17572196..17572541 715..1044 93 -> Plus