FMO12534.5prime Sequence
1060 bp (961 high quality bases) assembled on 2012-10-30
> FMO12534.5prime
AGTCGACATGGCACGGTGGCTGCTTAACTCGTTTTCGCTGATCCTGCTCC
TGGCAGTGTGCAGCCTACAGGCGCGCCTGATCCTTCCCTTATCCCTGGAC
GATGGACAGCTGGAGACCAAGGGAGCAGCCCTCTTTGCCACCTCCCGCGT
GGATGATAATAGTGCCGGCAATTACCGACTGCCAAATACAACGGAACCGG
AGTCCTACAACGTGGAACTCTGGACCAATGTCCATAATGGCGATACCGAA
TTCAATGGCACCGTCAATATCGATATCCGGGTTTTGAACGAGACATCGAA
TATTACGCTTCACTATCGCCAGACGTCGAATTTTGAAGCGACGATTATCA
GCCGGGATGTGGCCACGCCCACGGCAATTCCACTCACTGTAACCCCCGAG
TTGCAGCGCGAATTCCTCGTCCTTACGCAGACCACCGCTGGTGATGCATT
TGGAGCCAACACCAACTGGACCATCACCATCAACTACACTGGCATCCACC
GATCTGATATGGGCGGTTTCTATATCTCCAGTTATACGGACGATGATGGC
GAACAGCACTTCTTGGCCACCACGCAATTCGAGAGCACAAACGCCCGTCA
CGCGTTTCCCTGTTACGATGAGCCTGCCCGTAGAGCTAACTTTACGATTA
CCATCCACCATGATCCCTCCTACACTGCCATCAGCAATATGCCAGTAAAC
ACCGCTGCCACCAGCTCGGGAGTCACTGCTTTCCAGACGACGCCCAAAGA
TGTCCACCTACCTGGTGGCCCTTCATCGTCTCCGATTTTGAGTCCACCAC
CGGAGAACTGAATGGCATCCGCCAGCGGGTTTTCTCGCGCAAGGGAAAGC
AGATCAGCAGATGGGCCCTTTGGTCCGGATTGCTGTGAGTCCAGTCTGGC
TAGCTACTTTGGGGTTCCCTTCGCCTGCCCAGCTAGATCAAGCTGGATAC
CGGACTTCTCTGCGTGCATGAGAACTGGGGTCTGGCCACTATCGTGAGCA
GTACATGTGGTGGACCAGCGGACTCCCGATCACTGGAAGCGAACTTGGCC
AAATATTGAA
FMO12534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31343-RA | 3004 | CG31343-RA | 38..1057 | 6..1014 | 4740 | 98.4 | Plus |
CG31233-RB | 3059 | CG31233-RB | 657..1140 | 533..1008 | 285 | 73.6 | Plus |
CG31233-RA | 2945 | CG31233-RA | 543..1026 | 533..1008 | 285 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21745303..21745855 | 6..558 | 2750 | 99.8 | Plus |
3R | 32079331 | 3R | 21746470..21746784 | 711..1014 | 915 | 94 | Plus |
3R | 32079331 | 3R | 21746186..21746341 | 559..714 | 780 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1189..1233 | 450..494 | 117 | 73.3 | Plus |
FMO12534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:37 Download gff for
FMO12534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31343-RA | 30..1075 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:33 Download gff for
FMO12534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31343-RA | 33..1078 | 1..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:25 Download gff for
FMO12534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31343-RA | 33..1078 | 1..1032 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:25 Download gff for
FMO12534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21745298..21745855 | 1..558 | 99 | -> | Plus |
3R | 21746186..21746341 | 559..714 | 100 | -> | Plus |
3R | 21746474..21746819 | 715..1044 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:33 Download gff for
FMO12534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17571020..17571577 | 1..558 | 99 | -> | Plus |
arm_3R | 17571908..17572063 | 559..714 | 100 | -> | Plus |
arm_3R | 17572196..17572541 | 715..1044 | 93 | -> | Plus |