FMO12535.5prime Sequence
920 bp (920 high quality bases) assembled on 2012-10-30
> FMO12535.5prime
GTCGACATGCAGTGGCTTACACTTATTTTGGTGGGGCTGTTTGCCTCGTT
CTTATCAATATCGATGTGCGTGGCTGTGCAGCCGCCCGATGATGGAAAAT
TGCGTGTTTGTGTGGTGGAATCGCGTGGCGTTTATCGGAAAACCCCCAAG
TTCTGTCCGCTGCTGGAGGCGAAGAGCAACATCGAGTGCGTCATCGGCGT
GGATCGATTGGATTGCGTGAGGCGTATCCACAAGGGCACCGCCCACTTTG
GAGTGCTCACCTCGGAGGATCTGGTGGCCGCACGCTGGGCCAGCGTTGAG
ATCCTGGTGGCCAGCGAGTTGCGCTCCCATGAGTCGCACTTTGAGTACGA
AATTGTGGCGGTGGTGGACAACCACGCCAATATCCATACTGTTCATGATC
TTCGAGGTGCAAGGCTGTGCCATCCTGGCTACGGTCTGGGCAATCACTGG
ACGGAGGTCCTGGCTAATTACTTTGAAGCTGCCATGGTCTCGAAGACTTG
TGATCCCGAAATGACCGTCACGGAGGATCGGATAGCATCCACAGCCAAGT
ACTTTGGTCCCAGTTGCAAGGCTGGTCCTTGGGTGCCCGATCCCAAGCAG
GATCGCATCCTAAAGAACCGATATCCCTCGCTGTGCGAGATGTGCTACGA
ACCGGATAGCTGTGACCAGACCGACAAGCATTGGGGACGCCGCGGAGCTC
TCTATTGCCTGACCAGTGGTGGCGGGAATGTGGCCTGGCTCGTCTGGATG
ATGTGCGCAGTCATTTTGGTTTCTCTGGCATTCCCGGCCCAGTCGAATCC
CTCGGACTTCAGCTATCTCTGCCCGGATGGTCATCTGCAGCCATTGAACG
CCAGTCAACCATGTGTCTGGGTGGCCCAAGCCGTGGCCCGTGTTGGCTGC
CCGTCCCAGCCATGCGCTTC
FMO12535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsf3-RA | 2377 | CG3666-RA | 143..1050 | 7..915 | 4445 | 99.5 | Plus |
| CG15706-RF | 2419 | CG15706-RF | 394..487 | 100..7 | 470 | 100 | Minus |
| CG15706-RD | 2578 | CG15706-RD | 642..721 | 100..21 | 400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16227592..16227959 | 101..468 | 1840 | 100 | Plus |
| 2R | 25286936 | 2R | 16228028..16228330 | 469..770 | 1465 | 99.7 | Plus |
| 2R | 25286936 | 2R | 16228400..16228542 | 771..915 | 595 | 97.2 | Plus |
| 2R | 25286936 | 2R | 16226643..16226736 | 7..100 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:07 has no hits.
FMO12535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:38 Download gff for
FMO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf3-RA | 111..1030 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:36 Download gff for
FMO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf3-RA | 136..1055 | 1..920 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:28 Download gff for
FMO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsf3-RA | 136..1055 | 1..920 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:28 Download gff for
FMO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16226636..16226736 | 1..100 | 97 | -> | Plus |
| 2R | 16227592..16227959 | 101..468 | 100 | -> | Plus |
| 2R | 16228028..16228330 | 469..770 | 99 | -> | Plus |
| 2R | 16228400..16228547 | 771..920 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:36 Download gff for
FMO12535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12115905..12116052 | 771..920 | 96 | | Plus |
| arm_2R | 12115097..12115464 | 101..468 | 100 | -> | Plus |
| arm_2R | 12114141..12114241 | 1..100 | 97 | -> | Plus |
| arm_2R | 12115533..12115835 | 469..770 | 99 | -> | Plus |
