Clone FMO12538 Report

Search the DGRC for FMO12538

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:38
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7422-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12538.5prime Sequence

1081 bp (958 high quality bases) assembled on 2012-10-30

> FMO12538.5prime
AGTCGACATGATCCACTGGTCTCTGATTGTCAGTGCCCTGGGCGTCTGCG
TGGCCGTCTTGGGCGGCTACTGCGGCTGGATTCTCTTCCCCAACATGGTA
CACAAAAAGGTCGAGCAGAGCGTTGTTATACAAGATGGCTCGGAACAATT
CAAACGATTTGTGAATTTACCTCAGCCATTGAACTTCAAAGTCTACATAT
TCAATGTGACCAATTCGGATAGGATTCAACAAGGTGCCATACCAATAGTC
GAGGAAATAGGACCCTATGTATACAAACAATTCCGCCAGAAGAAAGTGAA
GCACTTTTCGAGAGATGGATCGAAAATTTCCTATGTGCAAAATGTGCATT
TCGATTTCGATGCTGTTGCCTCAGCTCCATATACCCAAGATGATCGAATT
GTGGCTCTCAATATGCACATGAATGCATTTTTACAAGTATTCGTAATTGA
AATCACAGATATCTTTCAGGGATTTGCCAATAGGCTTAACTCTCGATTGA
ATCAAACGCCAGGCGTACGAGTCCTGAAACGATTGATGGAACGTATTCGA
GGGAAACGTAAATCTGTGCTGCAGATCTCTGAGAATGATCCTGGACTGGC
TTTATTGCTAGTCCACTTGAATGCGAATCTGAAGGCTGTCTTCAACGATC
CAAGATCGATGTTTGTGAGCACTTCTGTAAGGGAATATCTTTTCGATGGA
GTACGATTCTGTATCAATCCGCAAGGAATCGCCAAGGCAATTTGTAACCA
GATCAAGGAAAGTGGATCGAAAACAATCAGGGAGAAGAGCGATGGCAGCT
TGCATTCTCATTCTTCGGTCATAAAAATGGGTTCTGGTCACGAAGTATAC
GAGGTGCATACTGGAAAAGTGATCCTATGAGGGTATTGAGATTCAAAAAC
TGGATGATTCGCACACCTGCAGTGTGGCTGAATGCCAGTCAGAGGGGGAA
ACCTCGTTTGTAATCAAATCAATGGACTGATGCATCGCAATCGCATTCGC
ACGAGGGGAATCGATGTACATTTTAGCGCAAAATTGCGATCGTGCCAGTA
TCAACACCGATATACGTACAGGATACTGAAT

FMO12538.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Snmp2-RD 2837 CG7422-RD 964..2001 8..1030 4690 97.8 Plus
Snmp2-RC 2481 CG7422-RC 608..1645 8..1030 4690 97.8 Plus
Snmp2-RB 2343 CG7422-RB 608..1024 8..424 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7736609..7736869 822..563 1255 99.6 Minus
3L 28110227 3L 7738539..7738700 276..115 810 100 Minus
3L 28110227 3L 7738334..7738482 425..277 745 100 Minus
3L 28110227 3L 7738107..7738244 562..425 645 97.8 Minus
3L 28110227 3L 7741968..7742078 118..8 555 100 Minus
3L 28110227 3L 7736372..7736535 986..830 440 94.5 Minus
Blast to na_te.dros performed 2014-11-28 18:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 1120..1175 788..731 114 69 Minus
412 7567 412 412 7567bp 1425..1477 357..305 112 67.9 Minus

FMO12538.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:44 Download gff for FMO12538.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7422-RC 601..1660 1..1042 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:04 Download gff for FMO12538.5prime
Subject Subject Range Query Range Percent Splice Strand
Snmp2-RC 601..1660 1..1042 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:51 Download gff for FMO12538.5prime
Subject Subject Range Query Range Percent Splice Strand
Snmp2-RC 601..1660 1..1042 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:51 Download gff for FMO12538.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7738107..7738244 425..562 97 <- Minus
3L 7738335..7738482 277..424 100 <- Minus
3L 7738539..7738696 119..276 100 <- Minus
3L 7741968..7742084 1..118 96   Minus
3L 7736609..7736869 563..822 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:04 Download gff for FMO12538.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7729709..7729969 563..822 99 <- Minus
arm_3L 7731207..7731344 425..562 97 <- Minus
arm_3L 7731435..7731582 277..424 100 <- Minus
arm_3L 7731639..7731796 119..276 100 <- Minus
arm_3L 7735068..7735184 1..118 96   Minus