FMO12539.5prime Sequence
1070 bp (885 high quality bases) assembled on 2012-10-30
> FMO12539.5prime
CGACATGAGTTTTTCCAGCGACGAGGTGAACTTTCTGGTTTACCGATACC
TGCAGGAGTCGGGCTTTCTGCACTCGGCCTACGTGTTTGGCATTGAGTCA
CACATCTCGCAAAGTAATATCAATGGCGCATTGGTTCCACCTGCCGCTTT
GCTCACCATCCTGCAGAAGGGTCTTCTGTACACTGAAGTGGAGTGGAGCG
TAGGCGAAGACGGCGAGGTGGCGCGACCCATTGAAGGACTCTCTCTAATA
GACGCTGTCATGCCGGAGGTGAAGCCACTCAAGCCCATTGTGAAAACAGA
GCCGGGAAAACCCGGGGCAGTCGACTCTTCTGCCCCTGCCGGTGGCAACC
AGAACAACAATGCCAAGCCTGAGATAAAAATAGAACCGGGTACCGGAGTG
GCGGGCTCAGCAGGTGGAAACAAAATTGCTGGCAGCACCACGGGCACAAG
CATACTAACCGATCAGTCGGCAAGCGAGGTAGACTCCAGTGGAAATGCGG
CAAATAATGCTGGCGGCACATACGCCGGAAACAATGGAGCTGGAGGGAAC
CAGGCCAGTACTGGAGGATCTAATAGCACAAGCACACCAGCTGGTGGAGA
TTTGGCAGCACCTGGGGCAAGTCAAAAGAAATCCCAGAACTCGAATGAAG
CGGGAAGCTCATCTAGTGGCAATGCAGCAATGCAAATGCTACCAGTACCG
ATGATGCAGCCTCCTCAACATCCACAAATGGCAATAGCAGCACTTCCAGC
AGCGTAGAACAACCTACAAGCGGGCTGACGCCCGCTGGTGGAACTGTATC
ATCCTCCAATCCGGACGCAGCAGCATCGGCGGAGCTTCGACTGCAACAGG
ATCAAAGGCGCCAAGTGTAGCGGTTACGATTCGCGTAGAGCCCAGGAAAC
ACGTGCAGTCTTGATTCGTCCAATGCTCAAAGCTCTGCTTCCAAGTGAAC
CATCTCTTCGTCTACCAGCGGAGTGCTGGGACTCCCGCAGCCTCTTGTCC
CATGGAACATTGACGAGAACATCGAATACCCGAATTCCAAGGTCTCGTGT
ATTACGCGCACCGAAGCGAG
FMO12539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebi-RA | 3327 | CG4063-RA | 322..1379 | 4..1058 | 4840 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 415511..416510 | 62..1058 | 4250 | 97 | Plus |
| 2L | 23513712 | 2L | 415388..415447 | 4..63 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:21:52 has no hits.
FMO12539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:44 Download gff for
FMO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 317..1391 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:08 Download gff for
FMO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 319..1393 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:54 Download gff for
FMO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 319..1393 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:54 Download gff for
FMO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 415385..415446 | 1..62 | 98 | -> | Plus |
| 2L | 415512..416524 | 63..1070 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:08 Download gff for
FMO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 415385..415446 | 1..62 | 98 | -> | Plus |
| arm_2L | 415512..416524 | 63..1070 | 97 | | Plus |
