FMO12540.5prime Sequence
1088 bp (978 high quality bases) assembled on 2012-10-30
> FMO12540.5prime
TCGACATGTCACAATTCCGCGATAATTCATGGCTCGCCAATGCGCGATCA
TACGGCGTTTTGAAGAGTTTGAGAAGCTCGGCACGTTATGCCAAGGCCAA
ATCCAAGTCGGCCATTAATCTCAATGCCCATCTGAAGAAGCAGCAGAAGC
TGGAGGAAGGACATCCCGAAAAGAAGAGGCAGGATAAGAAAATACTCAGA
CAGAGTGTCAGTGAGGATCAGCCGATCTATGCGAATGTGGACGAGGTTAT
ACCGATCCATTTAGAACCGGAAACCGGAACCGAAGTCGATGCTCTAATGG
GTAATGCACAGGGACAGAACGGCTTCGAGGAACTCCGGCGATATGTGAAG
CAGGGCGGTGATTTTAGCAAGGAGCTCATCTTTGTCCTGCAGGAGAGAGC
CGATTCGGAGCTGATCTACTCCAAGTCGCTATCGAAACTGGCCAACTAGC
TGAACAAAGCGGGCAGGGAAATTCCCGGGAGCGTGGCCGACGCCTGGCGT
GGAGTGGCTACGGAGATGGAGAGCCGCAGCGACATCCATCGCCAGTTGGC
AGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGAAG
GACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGGCG
CGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCCTC
CCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGGACGCAATGCTGGACG
TGCGCATCCAGAAGTCACCATCGATTGCCCTGCTCCACCAGGGACCCAAC
AAGCACGCCGCAGAAAAGGAGCTCAAGTCAGCGGAGAAGGATTGCGTCAA
GCTGGATAACAAGCGCAAGAAGGCCGAGGAGGCGGTGAAGCGTGCGGATG
TGGATACTACACCCTGTGCGTGCGTTCGGAGCGAGCACGCGTAGACTGGG
AGATGTCGTGCTCCGGGGAGTGCCTACTGCAGAGCAGCGACAGCAGCGCT
GGCATATGCACACCTTTGCCCAGCAGTATGCACGCCTTCATCTCGAACTG
ATCCGGATTCTCGTGCTGGAGCCACTGCCTGCATCGCT
FMO12540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-RC | 3014 | CG42388-RC | 666..1712 | 6..1045 | 4940 | 98.7 | Plus |
| CG42388-RF | 2508 | CG42388-RF | 187..1206 | 33..1045 | 4805 | 98.6 | Plus |
| CG42388-RG | 5133 | CG42388-RG | 1833..2575 | 310..1045 | 3420 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9051467..9051889 | 623..1037 | 1675 | 96.9 | Plus |
| X | 23542271 | X | 9040037..9040317 | 32..312 | 1405 | 100 | Plus |
| X | 23542271 | X | 9051183..9051412 | 396..625 | 1135 | 99.6 | Plus |
| X | 23542271 | X | 9051033..9051122 | 308..397 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:22:01 has no hits.
FMO12540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:45 Download gff for
FMO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 661..1726 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:15 Download gff for
FMO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 661..1726 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:59 Download gff for
FMO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 661..1726 | 1..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:59 Download gff for
FMO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9040038..9040316 | 33..311 | 100 | -> | Plus |
| X | 9051037..9051122 | 312..397 | 100 | -> | Plus |
| X | 9051185..9051410 | 398..623 | 99 | -> | Plus |
| X | 9051468..9051910 | 624..1058 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:15 Download gff for
FMO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8934071..8934349 | 33..311 | 100 | -> | Plus |
| arm_X | 8945070..8945155 | 312..397 | 100 | -> | Plus |
| arm_X | 8945218..8945443 | 398..623 | 99 | -> | Plus |
| arm_X | 8945501..8945943 | 624..1058 | 96 | | Plus |
