FMO12542.5prime Sequence
1090 bp (985 high quality bases) assembled on 2012-10-30
> FMO12542.5prime
AGTCGACATGCAGACGTCATCGTCGCGAACCGCGGACAAGACCAAGCGTA
GGATTAGAATAGTAGTGTCCGAAAACCACAACGTAGCTGCTAGTAGTGTT
GCACCTGCACCACCCACAACCGCCTTCAACACCACCACCCATCACCAAAT
ACCGAGGGAATCCGATATCGAGACGAAGCGGCTAAACATCGACTACGGCG
ATGAGGGCAGCGCCGATTGGGATAAGGACCGCGAGGTGCTCATCCTGTCT
GGGAGACGGAACAAGAATGATAAAAACTGGGAGAACTGGGAGCGCATCCG
GGAGCAGAAGCTGGAGAAGATGAAGGGCATTTGTTTCGAGAGCTATCGCC
AGTCCAAGCGGGACAAGTTACTTCAAGCTAAGCCACGACCCAAACAACTT
GATTCCACCTGGTATACGGATAACATCTACTCGAACCGCTCCGATGACAT
GGACGAGGACTACGTGCCTGATTGCTTGAAATACGGACCTTTCCGCACAC
TGAGGGACATCCACGAGCTGGACGAGAAGAGTGGGGTTACGGAAGAACGT
CGTGTTGAGGGTGAAGGATCCCCCGGCTATGGCCTGCATCGTTCCAAGAG
CTGCAAGGAGTTTCAATACCCCAAGTCACAGAGTTGGTGCTTCGAGGGCA
ATGTTTTTGAAGCTGGCGGCGGTGTGGCCAGCGGGAGTGGTAGTTCAAGC
GGTGCTCCCCCACCAACCACCTCCATCCTGAAGAATCGAGCAGTGTTCCC
AAGTCATACTCCTTCAGTGCCACCACTAAGACCATGCCGTTTGATATCAT
CGACTATGAGCTGCCTCCTGTCTCGAATACGCGACGGGAGAAGATGAGGC
TCTAAGCGGACATGAATGCCCTCTGCAGCAGCAGCCTGATCGATGTTGCG
CCCGGGATCAGTGCACAGCGCCCGCTGCTGTTGGAGACATCTATCGGGAT
CGAGATGCGACCAGACAACCGGGGCGGGCAGCATTCGAAATCTAGTGCGG
CGATTGCTATTTCGAGGAGCGGCTGAGCAGAACGCCGCCCGTTCACGTAT
GTGGTGCCTTGCGCGAGATTGTTGTGCATCGCAGCGCAAC
FMO12542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-RV | 11050 | CG43729-RV | 6954..7983 | 7..1022 | 4735 | 98.3 | Plus |
| CG43729-RU | 10723 | CG43729-RU | 6627..7656 | 7..1022 | 4735 | 98.3 | Plus |
| CG43729-RO | 10924 | CG43729-RO | 6828..7857 | 7..1022 | 4735 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15466995..15467994 | 7..994 | 4410 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:22:11 has no hits.
FMO12542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:47 Download gff for
FMO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34318-RB | 743..1787 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:22 Download gff for
FMO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RI | 6851..7895 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:06 Download gff for
FMO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RO | 6821..7865 | 1..1030 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:06 Download gff for
FMO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15466988..15468032 | 1..1030 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:22 Download gff for
FMO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11354493..11355537 | 1..1030 | 97 | -> | Plus |
