Clone FMO12543 Report

Search the DGRC for FMO12543

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:43
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPvr-RI
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12543.5prime Sequence

1109 bp (980 high quality bases) assembled on 2012-10-30

> FMO12543.5prime
CGACATGGCGATGCTTCCGCGGTTGATTCTGCTGCCACTGCTCCTGATTT
TGCGGATCTCGTGGAGCGATGCTGTGCCTTTGCAGCAGTTCTCACCGGAT
CCCGATGACAGCATCGAGAACTGCGGCGGCGAGAATGGAGCTCCCCTGAT
GACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGACGAGCACCACGC
TTAAGTGCGAGGACGACGAGCCGATGAGCTGGTGGACCAGTCAATCGCAA
TATGTGCATGTGAAGTCCTTCGATAATACGGAGGATCCGGCTCGACCATT
CGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACTATGTGGCAGCCT
ACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCCAAGGAGGAGCAG
TCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATACGCCAGCTCCAT
CTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCGATAGTCATAACG
TGGTGACGGCACGCCAGTATACCGACGTAGTCATACCCTGTAAACCAGCC
ATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGGAGAAATGCATTC
CAGCAAATCTGTCGGTCGATACGATCCGCAACGGGGATTCACCATCGAAA
TCCGAAGCATCGTGGATGGCGGAGACTACTACTGCCGACCCAATCCGCCA
TTCCCGCATAACGAAGAGGAGATGACCAGCATAGAAGTGCGCTTTATTGC
AACCGGATTGATATCCCTCGTACCCAAACGACTAACATGGTGTACACATA
TGCACCAGGTGTCACCGATGGCGATGACGAGGTCCTCACTGTTACTAACC
AATCGACGGGTATTTGGCACTAATCCGTGTGGTGATGGAACTTTATCCAG
GGAGCGGGCACGGCGAAGTCCAGCCCGCCTGGCTCCGATGATTGCGTCGC
CCTCACCAAGAACAGGCAAGACGCAAACCGCTGCCAAAGCCCGTGATCAG
TCCTCCGTGAACAATACGGTCTTCACGAAACCACTTTCACCTTGAATGCA
GCAGTCCGGCTTACGTGAATCAGATACGATGGGATGTTCACTCCGCTCCC
GGATGAAAT

FMO12543.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Pvr-RJ 5627 CG8222-RJ 325..1434 5..1102 4930 97.2 Plus
Pvr-RI 5480 CG8222-RI 325..1434 5..1102 4930 97.2 Plus
Pvr-RM 5453 CG8222-RM 325..1434 5..1102 4930 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8228494..8229012 592..74 2595 100 Minus
2L 23513712 2L 8226931..8227151 966..749 910 97.3 Minus
2L 23513712 2L 8227670..8227826 749..593 785 100 Minus
2L 23513712 2L 8230125..8230194 74..5 350 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:22:17 has no hits.

FMO12543.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:48 Download gff for FMO12543.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvr-RJ 290..1322 1..1025 98 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:27 Download gff for FMO12543.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvr-RM 321..1353 1..1025 98 -> Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:10 Download gff for FMO12543.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvr-RM 321..1353 1..1025 98 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:10 Download gff for FMO12543.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8226929..8227150 750..967 96 <- Minus
2L 8227670..8227826 593..749 100 <- Minus
2L 8228494..8229011 75..592 100 <- Minus
2L 8230125..8230197 1..74 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:27 Download gff for FMO12543.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8226929..8227150 750..967 96 <- Minus
arm_2L 8227670..8227826 593..749 100 <- Minus
arm_2L 8228494..8229011 75..592 100 <- Minus
arm_2L 8230125..8230197 1..74 97   Minus