FMO12543.5prime Sequence
1109 bp (980 high quality bases) assembled on 2012-10-30
> FMO12543.5prime
CGACATGGCGATGCTTCCGCGGTTGATTCTGCTGCCACTGCTCCTGATTT
TGCGGATCTCGTGGAGCGATGCTGTGCCTTTGCAGCAGTTCTCACCGGAT
CCCGATGACAGCATCGAGAACTGCGGCGGCGAGAATGGAGCTCCCCTGAT
GACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGACGAGCACCACGC
TTAAGTGCGAGGACGACGAGCCGATGAGCTGGTGGACCAGTCAATCGCAA
TATGTGCATGTGAAGTCCTTCGATAATACGGAGGATCCGGCTCGACCATT
CGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACTATGTGGCAGCCT
ACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCCAAGGAGGAGCAG
TCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATACGCCAGCTCCAT
CTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCGATAGTCATAACG
TGGTGACGGCACGCCAGTATACCGACGTAGTCATACCCTGTAAACCAGCC
ATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGGAGAAATGCATTC
CAGCAAATCTGTCGGTCGATACGATCCGCAACGGGGATTCACCATCGAAA
TCCGAAGCATCGTGGATGGCGGAGACTACTACTGCCGACCCAATCCGCCA
TTCCCGCATAACGAAGAGGAGATGACCAGCATAGAAGTGCGCTTTATTGC
AACCGGATTGATATCCCTCGTACCCAAACGACTAACATGGTGTACACATA
TGCACCAGGTGTCACCGATGGCGATGACGAGGTCCTCACTGTTACTAACC
AATCGACGGGTATTTGGCACTAATCCGTGTGGTGATGGAACTTTATCCAG
GGAGCGGGCACGGCGAAGTCCAGCCCGCCTGGCTCCGATGATTGCGTCGC
CCTCACCAAGAACAGGCAAGACGCAAACCGCTGCCAAAGCCCGTGATCAG
TCCTCCGTGAACAATACGGTCTTCACGAAACCACTTTCACCTTGAATGCA
GCAGTCCGGCTTACGTGAATCAGATACGATGGGATGTTCACTCCGCTCCC
GGATGAAAT
FMO12543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvr-RJ | 5627 | CG8222-RJ | 325..1434 | 5..1102 | 4930 | 97.2 | Plus |
Pvr-RI | 5480 | CG8222-RI | 325..1434 | 5..1102 | 4930 | 97.2 | Plus |
Pvr-RM | 5453 | CG8222-RM | 325..1434 | 5..1102 | 4930 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8228494..8229012 | 592..74 | 2595 | 100 | Minus |
2L | 23513712 | 2L | 8226931..8227151 | 966..749 | 910 | 97.3 | Minus |
2L | 23513712 | 2L | 8227670..8227826 | 749..593 | 785 | 100 | Minus |
2L | 23513712 | 2L | 8230125..8230194 | 74..5 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:22:17 has no hits.
FMO12543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:48 Download gff for
FMO12543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvr-RJ | 290..1322 | 1..1025 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:27 Download gff for
FMO12543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvr-RM | 321..1353 | 1..1025 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:10 Download gff for
FMO12543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvr-RM | 321..1353 | 1..1025 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:10 Download gff for
FMO12543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8226929..8227150 | 750..967 | 96 | <- | Minus |
2L | 8227670..8227826 | 593..749 | 100 | <- | Minus |
2L | 8228494..8229011 | 75..592 | 100 | <- | Minus |
2L | 8230125..8230197 | 1..74 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:27 Download gff for
FMO12543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8226929..8227150 | 750..967 | 96 | <- | Minus |
arm_2L | 8227670..8227826 | 593..749 | 100 | <- | Minus |
arm_2L | 8228494..8229011 | 75..592 | 100 | <- | Minus |
arm_2L | 8230125..8230197 | 1..74 | 97 | | Minus |