FMO12545.5prime Sequence
1037 bp (925 high quality bases) assembled on 2012-10-30
> FMO12545.5prime
AGTCGACATGGCCTCTTCCACTTCGGTTATCCCTACCACCGTAAATCCCG
ATCTGCAGAAGGAACGAGATGCAGCCAGCTTTAACAGCGAAGAATTCGCC
GCTTGGTGGGCGGGGGGCGAGGAAGTGCTAAAGTTCAACCGCGGCGTTCG
TGAATATATGGAGAAGGATGTGGATTTGTCGGAGATGCTGCAGCTGCAAA
ACAAAACCCACGAAGAGATCATCGAGTTTTCCACGCGTGGAGCAATCGAA
GGCGCCAAGAAGCTACGCCGCCTGCAGGAGGAGCGCAATCCTGGCGGAGA
TGTCTACTGGCCGAACTTGTATGACGCTCAAGTGATGTGGGGTCTCGTTC
CCGGTGGCAATCCTTTTGGTGTGATGTACGTGATGCTGGTGAAAGCTCTG
CAGGCTCAGTGCACTCCGGAGCAGTATGAAGAATTCGGCAAGCTGGTGGA
ACTCTTCGAGATTTGCGGCACCTATGCCCAAACGGAACTGGGTCATGGAA
CCTACCTGCGCGGGCTGGAAACGCGTGCTGATTTTGATCGAAAGACTGAT
CAATTTGTACTCAACACCCCCAATATTTCCTCCTACAAGTGGTGGCCCGG
AGGCTTGGGCCACAGCTCCAATCACTGCCTGGTTATGGCTCAGCTGTACA
TCGACGGCGACTGCAAGGGTCCGCACATGTTCTTTATTCAGGTGCGTGAT
GAAGACACCCACGAACCACTGCCCGGCGTCCACATCGGTGATATTGGCAA
GAAAATGGGCTTCATTGGCGTAAACAATGGTTTCCTTGGATTAAAGAACG
TACGGATTCCTCGTACGAGAATGCTTGATGCGACATGCCTCAGGTGAAGC
TGATGGATCCTATGTTAGTAGTCCCACCAATTGTGCTTACCTACTTTGCC
ATGGTCCGCACGCCTTTGTGTAATTGCCAAACATTGCCGTGATGTTGGCT
CTGCTGCACCATTGCAACAGATACTCGGGCTTGTGCGCCGTCGAAACCCA
ATAATCCCAACGAAAGAGAGGCTCCGAATTCATGGGA
FMO12545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acox57D-p-RB | 2235 | CG9707-RB | 57..1074 | 8..1024 | 4670 | 97.9 | Plus |
| Acox57D-p-RA | 2552 | CG9707-RA | 374..1391 | 8..1024 | 4670 | 97.9 | Plus |
| CG5009-RA | 2506 | CG5009-RA | 765..817 | 467..519 | 205 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21387142..21387434 | 313..605 | 1435 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21387498..21387872 | 606..978 | 1400 | 96.8 | Plus |
| 2R | 25286936 | 2R | 21386915..21387078 | 150..313 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 21386682..21386825 | 8..151 | 720 | 100 | Plus |
| 2R | 25286936 | 2R | 17762497..17762549 | 467..519 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:22:28 has no hits.
FMO12545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:49 Download gff for
FMO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 322..1355 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:33 Download gff for
FMO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 367..1400 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:15 Download gff for
FMO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 367..1400 | 1..1035 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:15 Download gff for
FMO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21386675..21386823 | 1..149 | 97 | -> | Plus |
| 2R | 21386915..21387077 | 150..312 | 100 | -> | Plus |
| 2R | 21387142..21387434 | 313..605 | 99 | -> | Plus |
| 2R | 21387498..21387908 | 606..1016 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:33 Download gff for
FMO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17274180..17274328 | 1..149 | 97 | -> | Plus |
| arm_2R | 17274420..17274582 | 150..312 | 100 | -> | Plus |
| arm_2R | 17274647..17274939 | 313..605 | 99 | -> | Plus |
| arm_2R | 17275003..17275413 | 606..1016 | 95 | | Plus |
