Clone FMO12548 Report

Search the DGRC for FMO12548

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:48
Vector:pMK33-CFH-BD
Associated Gene/TranscriptGlcAT-S-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12548.5prime Sequence

1072 bp (968 high quality bases) assembled on 2012-10-30

> FMO12548.5prime
AGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACATCCGACGAGG
ATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCACGCAGCTGC
AGCAACAACACCACCCCCACCCATCCACCACATCCCATGGTCAGGAAGGG
GGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGTTCCTGCTCC
TCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGCCTCGGTGGC
TCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGGTAAGCAGCGGAT
CTCAGTAATGGAATCCCGCCCGGCTGACTGGCTGTTGAGATATACTCGAC
CTGACAAGCACGAGGGGGATGACCGGAATCCAGGTGAAGAGGAGTTCCCA
GGGAATCTTAGTCATAGAGCGCAAGAAATCTACGAATATGAATGGAATTT
CAAGATAGAAGAGCAAACGACCAAGCAAATGCAAATCCGAAATAGGCATC
GTTTCGATCCCAGAATCCATAGTATGAATTTCCGGCCATTGAACGAAACC
GTTCACATATGCAGCGAGAGTTACGAGGATCGACGGCAGTTCATGCAGGA
TAAGCCCCAATCTGATTACGTCCAGTTGCCCGTGATATACTTTGTTACTC
CAACGTATCCGCGGCGCGAGCAAATCCCAGAACTAACCCGTCTGGCGCAC
ACGCTGCTCCATATTCCACGATTGCACTGGCTGGTGGCCGATGATCAAGA
GAAATGCAATGACTATATGGACACGCTGCTCTATCGATTTGGTATGCCCT
TTACCCACATGGTCAGCCCGATGCCCAGCAAATTCCGGAATGAAAAGCCA
GCGCCGCGAGGTGTGCAAATCGGAGGGCAGCCTTGCAGTGGATACGGCAG
CATATCCCCACCAACGGAATACTTTACTTCGGAGAACGACGACAACCACC
TATGATCTGGCGTTTGTTCTCTGAAATCCGGAAAACGCAACGGGGTTTCC
ATGTTCCTGTAGTCTTATTGGCTGATATGGGGTCAGCGGGCCCATTGTGG
GGCCAAGGCAAGGTTGATAGCA

FMO12548.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
GlcAT-S-RC 2116 CG3881-RC 495..1556 8..1072 4965 98.3 Plus
GlcAT-S-RB 2406 CG3881-RB 775..1325 519..1072 2410 96.8 Plus
GlcAT-S-RA 1677 CG3881-RA 46..596 519..1072 2410 96.8 Plus
GlcAT-S-RB 2406 CG3881-RB 495..774 8..287 1400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9617330..9617840 8..518 2555 100 Plus
2L 23513712 2L 9621145..9621420 519..794 1380 100 Plus
2L 23513712 2L 9621478..9621735 791..1049 815 92 Plus
Blast to na_te.dros performed on 2014-11-28 18:20:38 has no hits.

FMO12548.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:35 Download gff for FMO12548.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RC 488..1553 1..1071 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:19 Download gff for FMO12548.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RC 490..1555 1..1071 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:12 Download gff for FMO12548.5prime
Subject Subject Range Query Range Percent Splice Strand
GlcAT-S-RC 490..1555 1..1071 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:12 Download gff for FMO12548.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9617325..9617840 1..518 99 -> Plus
2L 9621145..9621417 519..791 100 -> Plus
2L 9621479..9621742 792..1057 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:19 Download gff for FMO12548.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9617325..9617840 1..518 99 -> Plus
arm_2L 9621145..9621417 519..791 100 -> Plus
arm_2L 9621479..9621742 792..1057 93   Plus