FMO12548.5prime Sequence
1072 bp (968 high quality bases) assembled on 2012-10-30
> FMO12548.5prime
AGTCGACATGTCTAGTGCCAGGCTACTCGAGTCGCAGACATCCGACGAGG
ATAACGAGGACATCGAGCGGCGGCCTCACCAGAGCCATTCACGCAGCTGC
AGCAACAACACCACCCCCACCCATCCACCACATCCCATGGTCAGGAAGGG
GGGTGTGGCCAGGAGGATCTGCCTGATAGGTGGGGCACTGTTCCTGCTCC
TCGTCGCCCTCTGCTACCTCACCCTCAGCGGGGACACTCGCCTCGGTGGC
TCCGAGGATTCGGAGGAGGGATCTCACCATGGATTAGGTAAGCAGCGGAT
CTCAGTAATGGAATCCCGCCCGGCTGACTGGCTGTTGAGATATACTCGAC
CTGACAAGCACGAGGGGGATGACCGGAATCCAGGTGAAGAGGAGTTCCCA
GGGAATCTTAGTCATAGAGCGCAAGAAATCTACGAATATGAATGGAATTT
CAAGATAGAAGAGCAAACGACCAAGCAAATGCAAATCCGAAATAGGCATC
GTTTCGATCCCAGAATCCATAGTATGAATTTCCGGCCATTGAACGAAACC
GTTCACATATGCAGCGAGAGTTACGAGGATCGACGGCAGTTCATGCAGGA
TAAGCCCCAATCTGATTACGTCCAGTTGCCCGTGATATACTTTGTTACTC
CAACGTATCCGCGGCGCGAGCAAATCCCAGAACTAACCCGTCTGGCGCAC
ACGCTGCTCCATATTCCACGATTGCACTGGCTGGTGGCCGATGATCAAGA
GAAATGCAATGACTATATGGACACGCTGCTCTATCGATTTGGTATGCCCT
TTACCCACATGGTCAGCCCGATGCCCAGCAAATTCCGGAATGAAAAGCCA
GCGCCGCGAGGTGTGCAAATCGGAGGGCAGCCTTGCAGTGGATACGGCAG
CATATCCCCACCAACGGAATACTTTACTTCGGAGAACGACGACAACCACC
TATGATCTGGCGTTTGTTCTCTGAAATCCGGAAAACGCAACGGGGTTTCC
ATGTTCCTGTAGTCTTATTGGCTGATATGGGGTCAGCGGGCCCATTGTGG
GGCCAAGGCAAGGTTGATAGCA
FMO12548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GlcAT-S-RC | 2116 | CG3881-RC | 495..1556 | 8..1072 | 4965 | 98.3 | Plus |
GlcAT-S-RB | 2406 | CG3881-RB | 775..1325 | 519..1072 | 2410 | 96.8 | Plus |
GlcAT-S-RA | 1677 | CG3881-RA | 46..596 | 519..1072 | 2410 | 96.8 | Plus |
GlcAT-S-RB | 2406 | CG3881-RB | 495..774 | 8..287 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9617330..9617840 | 8..518 | 2555 | 100 | Plus |
2L | 23513712 | 2L | 9621145..9621420 | 519..794 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 9621478..9621735 | 791..1049 | 815 | 92 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:38 has no hits.
FMO12548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:35 Download gff for
FMO12548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RC | 488..1553 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:53:19 Download gff for
FMO12548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RC | 490..1555 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:12 Download gff for
FMO12548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GlcAT-S-RC | 490..1555 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:12 Download gff for
FMO12548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9617325..9617840 | 1..518 | 99 | -> | Plus |
2L | 9621145..9621417 | 519..791 | 100 | -> | Plus |
2L | 9621479..9621742 | 792..1057 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:53:19 Download gff for
FMO12548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9617325..9617840 | 1..518 | 99 | -> | Plus |
arm_2L | 9621145..9621417 | 519..791 | 100 | -> | Plus |
arm_2L | 9621479..9621742 | 792..1057 | 93 | | Plus |