Clone FMO12549 Report

Search the DGRC for FMO12549

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:49
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3033-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12549.5prime Sequence

1095 bp (989 high quality bases) assembled on 2012-10-30

> FMO12549.5prime
TCGACATGGGCCTGCTGTCCGATCCGTCGATATCGACGCAAAGCAAGCTG
GTGGACGGACTGGCGCGTCATGTTCGCAAGGTGTGCTACGCCCTTTATGT
GGCGGGTGTGGCCTGGTTCTTCTGTTTGGCGCTGCCGGAGTTCAACCACG
GGACATATCTCTCCGAGAATGCTCTTTCGCCAGGCTTGGTCTATCCGGAG
ATCCGCATCGATGCGAATCGTCTGGCCATCCAGTTGCTGGAGGAGCTGCA
GCGGGAGCGAAAGGATCATCTGTCCACCACGCCGCACGCCTGGATTGCGG
CCAAGATGAACGAGTTCGGCCTGGAGACGCACACGCACAACTACACGTTG
CGCTACCCATTTGGCGGCGGTAAAGAGTATCACGGCAAGAATATCTACGG
CATATTGAGGGCCCCAAGAATTGCCTCCACGGAGGGCATCGTTTTTGCGG
CTCCATATCGCGCTGCCAGTTCCGTGCACACGGACATTTCCGCCAGCGTG
CCGCTTCTGCTGGCCTTCGCCGATTTTGCCCGGCGCAAGAACTACTGGGC
GAAGGATCTGATCTTCCTGATCACCGAACAGGAGCAGCTGGGCATGCAGG
CCTGGCTGGAGGCTTATCACGATGGCGACCGGGAACTGGACTTGAGCAAG
GCGTACCTGCGTCCTGGCAATTTGCCCGCTCGCGCTGGTTCGCTGCAAGC
GGCTCTGAATATTGAAGTTCAGGATCTGGAGATTGACCATGTGGATGTGC
GAATAGAGGGCTTGAACGGCAAGCTGCCCAATCTGGATATGTTCAATCTG
GTGCAGAGAATTATGGCCCGCGAGGGCATCGCCTCTGGCTATAAACAAGC
GCCACGCAAGAAGCGTCGTCACAGCCAGTCGCACTTCGAGCAGACTTCCG
CCAGATGCTGACCATGCTGGCCAGCCAGTCGTCAGGCGTACCCACTGGCA
ATCATGGGCTGTTCCACCGGTATCGGATTCGATGCTTTGAACATAGCTGC
CCATCGAGGGCCACCCATGCCCACACTGAAGGGCAGCCCAGAACGGGCAC
GGGTGCCCTTGCTGAAGGGCCATCGAAGGAATGCCAGGAGATCTG

FMO12549.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
GAA1-RA 2388 CG3033-RA 102..1186 6..1090 5125 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5872121..5873020 1082..182 4100 98.2 Minus
X 23542271 X 5873078..5873256 184..6 895 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:22:48 has no hits.

FMO12549.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:51 Download gff for FMO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3033-RA 104..1160 1..1057 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:46 Download gff for FMO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
GAA1-RA 97..1153 1..1057 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:24 Download gff for FMO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
GAA1-RA 97..1153 1..1057 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:24 Download gff for FMO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5872150..5873018 184..1051 98 <- Minus
X 5873079..5873260 1..183 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:46 Download gff for FMO12549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5766183..5767051 184..1051 98 <- Minus
arm_X 5767112..5767293 1..183 98   Minus