FMO12550.5prime Sequence
1077 bp (965 high quality bases) assembled on 2012-10-30
> FMO12550.5prime
AGTCGACATGGCGTACCTACTAAGCTTTGGCATCGTGGCCGCCCTATTCC
TGGCCAGCATCTCGCTGTACCGTTACGGAAACATACCACGTCAGCACATC
CTGGTCACCCTGTCCGTGCTGACCGCCTGGTGTTTCTCCTTTCTAATTGT
ATTCACCATTCCGCTGGACGTGACATCGACGCTTTACCGGCAGTGCGTGG
AGGAGCACCGACCGACCCCAGCCCCAAATGTGACCAACACGTCGAGCGCC
ACGGTGGGTCCGCCGCCTCAGTGCCAGGAACCGTGGGGCATGGTGCCCGC
CTCCGTGTTCCCAAACCTCTGGCGCATTATTTACTGGAGCTCACAGTTCC
TCACCTGGTTGATTATGCCGCTGATGCAGTCGTACCTTAAGGCGGGCGAC
TTCACCGTCAAGGGAAAACTTAAATCGGCACTGATAGAGAATGTTATCTA
CTACGGTTCCTACCTGTTCATCTGTGGCGTACTACTCATCTATATTGCCG
TCAAAGGAGAGTCTCTGGATTGGCAAAAGCTCAAGGCAATTGCCTCGTCC
GCATCGAACACATGGGGATTGTTTCTGCTCATCCTGTTACTGGGATATGC
TCTGGTGGAGGTACCTCGATCGTTGTGGAACAACGCCAAGCCGGGATTTG
CACTGCAATATGCCTACTTCAAGGCAGCCAAATTGAGCACTGAGAAGGCC
GAGGCTGAGGAGCATGTGGATGATATCCTTGAGTCGCTGCAAGGCCTTAG
CCGCGTCATACCCAACAATCACGAGTTGCGCCCCTGCCTGAGACCATTCT
GCGCAAGGTTCCCATTGAGCTGCAAGAGCGAGCGAGTCGAAACTTTGCGC
GCACTGGAGGCAGCGGCATGGGTGCCACGAGTTCCACTATCTTGCCTTCG
GAAAAGCGCTGGGTTCGCATTCATAGCAAGTAATCAAATCGCTGCAAACA
TTGCAGCGCACGAAGCGCCTATGAACGTGCAGGTGCAGAACAAGTGCTGC
ATCTGGAGATGTGCCAGAATTATCACCTCTCGAACGCGCTCAATCTTGGT
TCCCGGCCCAGCGCAACGCAACTTGGA
FMO12550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42511-RA | 2767 | CG42511-RA | 535..1542 | 8..1013 | 4765 | 98.7 | Plus |
| CG8135-RA | 2767 | CG8135-RA | 535..1542 | 8..1013 | 4765 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9405735..9406566 | 178..1008 | 3760 | 97.8 | Plus |
| 3R | 32079331 | 3R | 9404919..9405089 | 8..178 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:22:51 has no hits.
FMO12550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:52 Download gff for
FMO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42511-RA | 538..1565 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:47 Download gff for
FMO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8135-RA | 528..1555 | 1..1026 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:26 Download gff for
FMO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8135-RA | 528..1555 | 1..1026 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:26 Download gff for
FMO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9404912..9405089 | 1..178 | 98 | -> | Plus |
| 3R | 9405736..9406566 | 179..1008 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:47 Download gff for
FMO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5230634..5230811 | 1..178 | 98 | -> | Plus |
| arm_3R | 5231458..5232288 | 179..1008 | 98 | == | Plus |
