FMO12552.5prime Sequence
1105 bp (977 high quality bases) assembled on 2012-10-30
> FMO12552.5prime
AGTCGACATGGAGTCCAATATATATTTAGTTTTTCTATTGACGTTTCTGC
TGTACAATAATGCCAGAGCCGAAATCAGCGATCATCTGCGGGAGGACATA
CCGGACTTAGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCAATGG
CAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCCAGAT
ACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTTTACC
CACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCGATGC
CGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGATCAAC
TGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAGTAAA
CGAAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATTACTG
CAATGTTTGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGATGTG
ACGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGCCGT
TCTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCTTCT
TCATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAACAG
GACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAGCGC
CGGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCGGCT
CGGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAGGTC
ACCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCGCGG
TCACTGGCATGGCGAAAGCATCGCCGTGAGATATTCTTCAGTCGCGACGA
GGAGTCCTGGAAGCGGGGAGACAGAGATATATAGCACCATATTGCTACGA
CATGAAAATAATTCTGGGATTCATCGGCTCTTAATGACGTTCGCGGAACT
CGTGCACCCACCTTTGGCCTGATGACGCACTACTATCCACTGGACTCCGC
TCTTTGATCACTAAACCGTAACGCCTATATCCCACACGAATTGAATTCGA
AACTT
FMO12552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-RA | 2415 | CG1891-RA | 55..1119 | 8..1075 | 5040 | 98.6 | Plus |
| sax-RB | 2716 | CG1891-RB | 417..1420 | 69..1075 | 4735 | 98.5 | Plus |
| sax-RC | 2451 | CG1891-RC | 280..1155 | 197..1075 | 4095 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7807705..7808366 | 272..934 | 3125 | 99.1 | Plus |
| 2R | 25286936 | 2R | 7807070..7807201 | 67..198 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 7807566..7807644 | 196..274 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 7808508..7808648 | 933..1075 | 380 | 93.8 | Plus |
| 2R | 25286936 | 2R | 7806538..7806598 | 8..68 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:23:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 3516..3616 | 144..250 | 115 | 62 | Plus |
FMO12552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:53 Download gff for
FMO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 57..1139 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:55 Download gff for
FMO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 51..1133 | 1..1089 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:32 Download gff for
FMO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 51..1133 | 1..1089 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:32 Download gff for
FMO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7806534..7806598 | 1..68 | 95 | -> | Plus |
| 2R | 7807072..7807201 | 69..198 | 100 | -> | Plus |
| 2R | 7807569..7807644 | 199..274 | 100 | -> | Plus |
| 2R | 7807708..7808366 | 275..934 | 99 | -> | Plus |
| 2R | 7808510..7808662 | 935..1089 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:55 Download gff for
FMO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3694039..3694103 | 1..68 | 95 | -> | Plus |
| arm_2R | 3694577..3694706 | 69..198 | 100 | -> | Plus |
| arm_2R | 3695074..3695149 | 199..274 | 100 | -> | Plus |
| arm_2R | 3695213..3695871 | 275..934 | 99 | -> | Plus |
| arm_2R | 3696015..3696167 | 935..1089 | 91 | | Plus |
