FMO12553.5prime Sequence
1121 bp (985 high quality bases) assembled on 2012-10-30
> FMO12553.5prime
AGTCGACATGTGGATATTGTTGGGTATCGCAGTGCTGATCATGACTTTAG
TCTGGGATAATAGTCGCAAACAATGGAGAGTTAACACTTTTGAAAAGTCC
AGGATTTTGGGACCTTTTACGATCCCTATAGTGGGCAATGGACTGCAGGC
CTTAACTTTGAGGCCAGAAAATTTTATTCAGAGGTTTGGTGACTACTTCA
ATAAATATGGCAAAACCTTCCGCCTGTGGATTCTAGGCGAGTGTCTTATT
TACACGAAGGATCTAAAATATTTTGAATCCATACTGAGTAGTAGCACACT
GCTCAAAAAAGCTCACCTCTACCGATTTCTGCGTGATTTTCTTGGCGATG
GACTTCTTTTAAGCACGGGAAATAAGTGGACTTCTCGCAGAAAGGTTCTC
GCACCTGCTTTTCACTTCAAATGCCTTGAAAACTTCGTCGAGATAATGGA
TAGAAATAGTGGAATTATGGTGGAGAAATTGAAAAACTATGCTGATGGCA
AAACGTGCGTGGACCTATTCAAGTTTGTTTCTCTGGAAGCCCTGGATGTG
ACCACAGAGACCGCCATGGGTGTCCAGGTGAATGCTCAGAACGAACCAAA
TTTCCCCTATACAAAAGCTCTTAAAAGTGTGGTTTATATCGAGTCCAAAC
GATTGGCAAGTGTCTCGATGCGGTATAATTGGCTTTTCCCGCTGGCGGCT
CCTTTGGTTTATCGCCGTTTGCAAAAAGACATAGCTATAATGCAGGACTT
TACTGACAAGGTCATTCGCGAACGACGAGCGATTCTGGAGCGGGCCAGGG
CGGATGGCACCTACAAGCCGCTGATAATGGAGACGATGATATCGGTGGTA
AAGCTAAGATGACTTTGCTGGACATTCTGCTGCAAGCCACCATTGATAAC
AAGCCCTTAAGCGATGTGGATATCCGCGAGAGTTGACGTTTTTAATATTC
GCAGGAGATGACACTACACCAGTGGAGTGTCCCATGCACTACATGCGATA
TCAGACATCCCAGTTCAAGGAGTGCATCTACGAGAACTAGTGTCTGTTTG
GTAACAGATTCCCGACGCCTCATGAACCAAACAGTTGTTGAACTAAGTAT
CTGGACTGCGTGATCAAGGAA
FMO12553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4d21-RA | 1821 | CG6730-RA | 83..1206 | 8..1120 | 5155 | 98 | Plus |
| Cyp4d20-RA | 1817 | CG16761-RA | 339..1120 | 206..984 | 370 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7605948..7606334 | 171..557 | 1935 | 100 | Plus |
| 2L | 23513712 | 2L | 7606521..7606719 | 626..824 | 995 | 100 | Plus |
| 2L | 23513712 | 2L | 7605682..7605844 | 8..170 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 7606785..7607086 | 829..1120 | 760 | 91.1 | Plus |
| 2L | 23513712 | 2L | 7606392..7606463 | 556..627 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:23:13 has no hits.
FMO12553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:54 Download gff for
FMO12553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d21-RA | 76..1206 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:59 Download gff for
FMO12553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d21-RA | 76..1206 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:35 Download gff for
FMO12553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4d21-RA | 76..1206 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:35 Download gff for
FMO12553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7605675..7605844 | 1..170 | 97 | -> | Plus |
| 2L | 7605948..7606334 | 171..557 | 100 | -> | Plus |
| 2L | 7606394..7606463 | 558..627 | 100 | -> | Plus |
| 2L | 7606523..7606719 | 628..824 | 100 | -> | Plus |
| 2L | 7606780..7607086 | 825..1121 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:59 Download gff for
FMO12553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7605675..7605844 | 1..170 | 97 | -> | Plus |
| arm_2L | 7605948..7606334 | 171..557 | 100 | -> | Plus |
| arm_2L | 7606394..7606463 | 558..627 | 100 | -> | Plus |
| arm_2L | 7606523..7606719 | 628..824 | 100 | -> | Plus |
| arm_2L | 7606780..7607086 | 825..1121 | 92 | | Plus |
