Clone FMO12554 Report

Search the DGRC for FMO12554

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:54
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSir2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12554.5prime Sequence

1081 bp (966 high quality bases) assembled on 2012-10-30

> FMO12554.5prime
AGTCGACATGATGGAAAATTACGAGGAAATTCGCCTGGGCCACATTAGGT
CTAAAGATCTGGGCAACCAGGTGCCAGACACTACGCAATTCTATCCGCCA
ACTAAGTTTGATTTTGGCGCGGAAATTCTGGCCTCAACGTCAACAGAGGC
AGAGGCAGAGGCAGAAGCAACAGCAACAACCACAGAACCAGCAACAAGCG
AACTTGCTGGCAAAGCAAATGGTGAAATCAAAACAAAAACATTGGCTGCC
AGGGAAGAACAAGAGATTGGCGCCAATTTGGAGCATAAAACCAAAAATCC
CACAAAGTCAATGGGCGAGGATGAAGATGACGAGGAGGAGGAGGAAGAGG
ACGATGAGGAGGAGGAGGAGGACGACGAGGAGGGAATCACCGGAACGAGC
AACGAGGATGAGGACTCCAGCTCAAATTGCTCCTCATCCGTGGAACTCGA
CTGGAAGCTGCGCTGGTTGCAACGAGAATTTTACACAGGTCGTGTGCCGC
GCCAGGTTATTGCCAGCATTATGCCGCATTTCGCCACCGGCCTGGCGGGC
GACACCGACGACTCCGTGCTGTGGGACTATTTGGCCCACCTGTTGAACGA
GCCGAAGCGGCGCAACAAGCTGGCCTCAGTGAACACCTTCGACGATGTCA
TCAGTTTGGTCAAGAAATCACAGAAGATCATTGTGCTAACGGGAGCCGGA
GTATCCGTCTCCTGCGGCATTCCGGACTTCCGGTCCACCAATGGCATATA
TGCGCGATTGGCCCATGATTTTCCCGATCTGCCCGATCCGCAGGCCATGT
TTGATATCAACTACTTCAAGAGGGATCCACGACCGTTCTACAAGTTTGCC
CGCGAGATATATCCCGGCGAGTTTCAGCCCTCACCCTGCCATCGTTTCAT
CAAAATGCTGGAGACCAAGGCAAACTGTTGCGCAACTACACACAGAACAT
CGACACCCTCGAGCGGGTGGCAGCATTCAGCGAGTAATCGAGTGTCACGC
TTCTTTTCACGCCTCGTGCACAATGTTCGTTTCAGTGCAACGCCTGACGC
CCTGCAGGCGACATATTTGGCAAGCGATCCG

FMO12554.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Sir2-RA 3809 CG5216-RA 428..1504 8..1077 5060 98.5 Plus
DnaJ-H-RB 2035 CG9828-RB 1..82 89..8 410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13165991..13166984 8..999 4855 99.7 Plus
Blast to na_te.dros performed 2014-11-28 18:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6846 131..196 159 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2476 135..264 157 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6813 131..217 147 63.2 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3284..3375 149..241 147 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2437 149..270 144 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2360..2486 131..251 142 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2413 131..196 141 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6813 131..196 141 68.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6793 149..218 134 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6847..6912 131..196 123 65.2 Plus

FMO12554.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:55 Download gff for FMO12554.5prime
Subject Subject Range Query Range Percent Splice Strand
Sir2-RA 441..1517 8..1077 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:06 Download gff for FMO12554.5prime
Subject Subject Range Query Range Percent Splice Strand
Sir2-RA 428..1504 8..1077 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:39 Download gff for FMO12554.5prime
Subject Subject Range Query Range Percent Splice Strand
Sir2-RA 428..1504 8..1077 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:39 Download gff for FMO12554.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13165991..13167067 8..1077 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:06 Download gff for FMO12554.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13165991..13167067 8..1077 98   Plus