Clone FMO12555 Report

Search the DGRC for FMO12555

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:55
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG32473-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12555.5prime Sequence

590 bp (473 high quality bases) assembled on 2012-10-30

> FMO12555.5prime
CTATTCCGGCAATATAAGCATCAGCCTGCAAGTACTGGAGCCCATAGCCT
TCATCCCAGTCCATGTGAAGCAACTGAATGTGAGCACCGTTGAGGTGAAG
CGCCTGGATGAATCTGGAGCGCCGCTTAAGGACATCACCCCCACGCTGAC
CTTTGCCCATCCGGAGTTTGAGTACTGGGTGACCGAGTTCGAACAGCCGC
TGGAGGCGGGAAACTACTCACTGCTGCTCAACTTTACGGGATCGCTTGTA
GATCGGATTACGGGGATGTACCAGAGCTCCTACTTGGATAAGCTGAAAAC
CCGCTCCAGATCAATCATTTCCACAAAGTTTGAGCCCACTTATGCCCGCC
AAGCATTCCCCTGCTTCGATGAGCCCGCCCTTAACTCAGTTCACCATAAC
GGTGGCCCGTCCAAGTGGTGATGAGTACCATGTGCTGTCCAACATGCCAG
TGCCAGCGAGTATGTCGATGGCGATATCACCGGAGGGTGACTTCGCCGGA
GACGGTACCATGGACACCTATTCTGGCCGCCTTTTGTGTGTTCTGATTTC
ATACAGAACCACTGTGGAGGAACAGCACTCGCCTTGAAAG

FMO12555.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG32473-RB 3002 CG32473-RB 262..857 1..590 2445 95.7 Plus
CG32473-RC 3635 CG32473-RC 895..1490 1..590 2445 95.7 Plus
CG32473-RA 3273 CG32473-RA 840..1128 308..590 925 91.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13309647..13309955 1..309 1530 99.7 Plus
3R 32079331 3R 13310143..13310321 307..482 780 98.3 Plus
Blast to na_te.dros performed on 2014-11-28 18:23:29 has no hits.

FMO12555.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:55 Download gff for FMO12555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32473-RC 893..1488 1..590 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:10 Download gff for FMO12555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32473-RC 895..1490 1..590 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:43 Download gff for FMO12555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32473-RC 895..1490 1..590 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:43 Download gff for FMO12555.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13309647..13309955 1..309 99 -> Plus
3R 13310146..13310432 310..590 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:10 Download gff for FMO12555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9135369..9135677 1..309 99 -> Plus
arm_3R 9135868..9136154 310..590 91   Plus