FMO12556.5prime Sequence
1062 bp (932 high quality bases) assembled on 2012-10-30
> FMO12556.5prime
AGTCGACATGTGGATTAGTAGCCGCTTCTTTGTGATTCTCCTGCTGCTCA
ATCTGGATAACACCTGCAGTGAACCGTTCGAAGCCCACCTGCGCGGTCCC
GGATTCGTTATGGAGCCACCCGGTCGTGTGGAGTTTTCGAACTCCTCCGG
CGGCTGGCTGGACTGCTCGGCCTCCGGAAGTCCGCAGCCGACGGTCGACT
GGGTGCACGCGGATGGCTCGGCGGTGACCGAGATCCATGGAGTGCGACGT
GTCCTGCGTAACGGAACGCTCGTCCTGATGCCATTCGCCGCGGCCGCCTA
CCACCAGGATGTGCACAACACGATCTATCGCTGTATTGCCAGCAATTCGG
TGGGTCGTATCGTCTCGCGGGACGTGCAAGTGAGGGCGGTTGTGGCCCAG
GCCTACAAAGTGGACGTAGAGGTGCTATCTGCCGCAAGGGGTTGTATCGC
CATTCTGCGCTGCGTGGTGCCCACGTTCGTCAAGGAATTGGTACGAGTGG
TCTCGTGGGTTCATGAACCCGCTATCTACATCTATCCCTCGTTGCAAGGC
GATGGCAAATTCCACTTGCTGCCCACCGGCGAGCTGCTCATCCACAATCT
GCAGGAGAGCGATGAGTCGCAGTCCTTCCGCTGCCGCAGCATGCACCGCC
TCACCCGTCAGGTGGTCGTCAGTTCACCCACCCGACTGCGTATTAATTCG
CATCGCGGCATCATTTCGCCGAGCGTGGTGGAGCACACGGCTCATGTGCA
GGTGTCGCAGACGAGGGCGCGGTGCTCCTGTGCGTCGCCCAGGGCTGTCC
TTTCGCCCGAATACAGCTGGGTTCACCCACAATGGAGCCCGGACCCCTGC
CCGTGCTGAGTGGCCCACGTGTCCGACTGCTTGGCCCCATCCTGGCCATG
AGCTGGTGACTGGCGAGGATTCCGGCGTCTACAGTTGCACGGCTGCAATG
TGGGCGGGCGAACTAGTGGCCGAGCTCTGCTCACGTGTGCCACCCCATCC
CATTGAATCTCACGAACGTCTCTACGGTTCATAGGGGGCTACTCGGGGAT
CCGGGAGGCCTG
FMO12556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam2-RS | 8881 | CG42256-RS | 615..1632 | 6..1019 | 4550 | 97.4 | Plus |
| Dscam2-RR | 7573 | CG42256-RR | 615..1632 | 6..1019 | 4550 | 97.4 | Plus |
| Dscam2-RQ | 8681 | CG42256-RQ | 615..1632 | 6..1019 | 4550 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7183623..7183956 | 389..56 | 1670 | 100 | Minus |
| 3L | 28110227 | 3L | 7183378..7183540 | 551..389 | 770 | 98.2 | Minus |
| 3L | 28110227 | 3L | 7182541..7182688 | 698..551 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 7182308..7182425 | 816..699 | 495 | 98.3 | Minus |
| 3L | 28110227 | 3L | 7180446..7180584 | 957..820 | 460 | 93.6 | Minus |
| 3L | 28110227 | 3L | 7189267..7189317 | 56..6 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:36 has no hits.
FMO12556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:56 Download gff for
FMO12556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42256-RJ | 596..1588 | 1..993 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:14 Download gff for
FMO12556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam2-RP | 610..1602 | 1..993 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:47 Download gff for
FMO12556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam2-RQ | 610..1602 | 1..993 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:47 Download gff for
FMO12556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7180410..7180586 | 817..993 | 91 | <- | Minus |
| 3L | 7182308..7182425 | 699..816 | 98 | <- | Minus |
| 3L | 7182541..7182687 | 552..698 | 100 | <- | Minus |
| 3L | 7183378..7183539 | 390..551 | 98 | <- | Minus |
| 3L | 7183623..7183955 | 57..389 | 100 | <- | Minus |
| 3L | 7189267..7189321 | 1..56 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:14 Download gff for
FMO12556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7175408..7175525 | 699..816 | 98 | <- | Minus |
| arm_3L | 7175641..7175787 | 552..698 | 100 | <- | Minus |
| arm_3L | 7173510..7173686 | 817..993 | 91 | <- | Minus |
| arm_3L | 7176478..7176639 | 390..551 | 98 | <- | Minus |
| arm_3L | 7176723..7177055 | 57..389 | 100 | <- | Minus |
| arm_3L | 7182367..7182421 | 1..56 | 94 | | Minus |
