FMO12557.5prime Sequence
1059 bp (956 high quality bases) assembled on 2012-10-30
> FMO12557.5prime
GTCGACATGTCACACATCCAATGCCTTTGGGTGTGTCTGGGTTTTTTTAT
GCTACTCGTCGACTTCATTCAACCCATCGGCTTGAATGTTTGTAACCGAT
CGCAGGTGGTTACTTACAAGAGATATGTCGAAAGGAGTAGAGTGATACCA
TACCAGCATAGATCTTTCTGGAGTGGTTGGCAGACAAAATACCGCACCGA
GTATTATACAGACGAAGAGACTGCCTACAGGACCGTAATGAGACCCAGTT
GCTGTGAGGGCTACGAAGGATCCGTTGAGAACTGCAAACCTGTCTGCAGA
CAACAGTGTCCTCAACATGGATTCTGCTCGTCCCCCAATACTTGCAGTTG
CAATGCGGGCTACGGCGGTATCGACTGCCATCCCGTTTGCCCAACGGTAT
GTGGAAAAAACGAGTTTTGCGATCGCCCCGGAGTCTGTAGCTGCCAAATT
GGCTACAAACGAACTTCTCCCAGCGACAATTGCCTTCCAGTTTGCGAAAA
GGAATGTGGACACCATAGCTTTTGCTCGGAGCCCGGGAAATGCGAATGTG
AACCTGGGTACGAGAAAGTGGGAAACGGCACCGTCTTTCCAGATGGATAC
AAGAACAATTCAAATGGCAATTGCTCGCCCATTTGCCCAAAGGATTGTGG
CCAAAACAGCCGATGTGTGAGGCCAGGTGTGTGCGAGTGTGAAAATGGAT
ATGCCGGTGACGACGGAGCACCAATTGCCGACCCGTGTGCTCCACTTGCC
CGGAGAACGGATTATGCTTGAGTCCCGGCGTTTGTGTCTGCAAGCCGGGC
TACGTAATGAGAAATGATCTCTGCCAGCCGCATTGCGAAAGTGCTCGGAT
AACGCACACTGCGTGGCGCCCAACCAATGCGAGTGCTTTCCGGGCTATGA
GTCGTCGGGGCGGACAGAGTGCGTACCAAGTGCAGCAGGGATGTACACGC
TTTGCTTGCACCGGAGAACTGGTGTTTGCAGTATGCTATCCAATGGGTTC
CATCAAGTCTGGTGAGCAAATGCAGCTAACTGGTTCATGGCATGACAGTC
CGAACGTAC
FMO12557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC1-RA | 2054 | CG8942-RA | 81..1134 | 7..1042 | 4700 | 97.5 | Plus |
| NimC1-RC | 2999 | CG8942-RC | 275..1118 | 217..1042 | 3650 | 96.9 | Plus |
| NimC1-RB | 2038 | CG8942-RB | 275..1118 | 217..1042 | 3650 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13975187..13975881 | 910..218 | 3360 | 99.6 | Minus |
| 2L | 23513712 | 2L | 13976477..13976689 | 219..7 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:42 has no hits.
FMO12557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:57 Download gff for
FMO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimC1-RA | 58..1091 | 1..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:17 Download gff for
FMO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC1-RA | 74..1107 | 1..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:51 Download gff for
FMO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC1-RA | 74..1107 | 1..1020 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:51 Download gff for
FMO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13975065..13975879 | 220..1020 | 97 | <- | Minus |
| 2L | 13976477..13976691 | 1..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:17 Download gff for
FMO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13975065..13975879 | 220..1020 | 97 | <- | Minus |
| arm_2L | 13976477..13976691 | 1..219 | 98 | | Minus |
