FMO12559.5prime Sequence
1091 bp (953 high quality bases) assembled on 2012-10-30
> FMO12559.5prime
TCGACATGCATCTGCCAGCGGGTCCAACGATGGTGGCCAACAACACACAG
GTCCTGGCCGCTGCCGCCGCCGCAGCAGCCGCCGCAGCGGCCGCGGTAGC
CCAGGGTCCTGGGCCGCAGCAGAGTAGCAATGCCACCACCGCCTCCGCAA
TCGCCATCAATCCCGCCCAGAGTCTGGCCAACACGAGCACCCACTCGGCC
AGCAGCACGGGCAGCTCCACACCAGATCTCAGCACGAACAACACCAGCTC
GAGCAGCAACGCCACCACCAGTCCGCAGAACTCCGCCAAGATGCCCAGCT
CGATGACCGACATGTTCGCCAGCCTGCACGAGATGCTGCAGGAGTATCAC
GGCGAGCTGGCCCAGACCGGATCGCCCTCGATCCTCTGCAGCGCCCTGCC
CAATCACTGGCGGTCGAACAAGTCGCTGCCCGGAGCCTTCAAGGTGATCG
CCCTGGACGACGTGCCCGATGGCACCCTGGTGTCCATCAAGTGCGGCAAC
GACGAAAACTACTGCGGCGAGCTGAGGAACTGCACCACGACCATGAAGAA
CCAGGTGGCCAAGTTCAACGATCTGCGCTTCGTGGGACGATCGGGACGCG
GCAAGTCCTTCACGCTGACCATCACCATTGCCACCTATCCGGTGCAGATC
GCCAGCTACAGCAAAGCCATCAAGGTGACCGTCGACGGGCCACGGGAGCC
AAGAAAGCTATGGCTATCCCCATCCCGGCGCGTTTAACCCGTTCATGCTG
AATCCCGCTTGGCTGGATGCGGCGTACATGACCTACGGCTATGCGGACTA
CTTCCGCCACCAGGCAGCCGCCCAGGCGGCCCAGGTGCATCATCCGGCAC
TGGCCAAGTCCTCGGCTTCTCGGTGTCGCCAAATCCCAATCCATCGGTGG
CCACCAGCTCCTCGTCGGCCGTTCAACAATCTGAGTATCTCCATTCTGCG
GCATCAATTGGCAGCGCGGCGGGACAACCGTCGGTCATGATGTCAATCGC
ATCTGGGAGCGGGCCTGCTCGCCCTATATGCATTCCGCAATTCCATTCAA
CATGGTGGCGCGCAGACCGCCCGCCAGGGAGCCAGCGCAAC
FMO12559.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| run-RB | 2171 | CG1849-RB | 251..1301 | 2..1051 | 4765 | 97.3 | Plus |
| run-RC | 3145 | CG1849-RC | 922..1981 | 2..1051 | 4700 | 96.7 | Plus |
| run-RA | 2474 | CG1849-RA | 251..1310 | 2..1051 | 4700 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20694689..20695392 | 2..705 | 3505 | 99.9 | Plus |
| X | 23542271 | X | 20695811..20696097 | 707..992 | 1145 | 94.1 | Plus |
| X | 23542271 | X | 9288353..9288560 | 382..589 | 290 | 76 | Plus |
| X | 23542271 | X | 20541938..20542030 | 494..586 | 210 | 81.7 | Plus |
| X | 23542271 | X | 20604130..20604203 | 568..495 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:22:42 has no hits.
FMO12559.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:50 Download gff for
FMO12559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RB | 247..1246 | 1..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:54:43 Download gff for
FMO12559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RB | 247..1246 | 1..1000 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:19 Download gff for
FMO12559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RB | 249..1248 | 1..1000 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:19 Download gff for
FMO12559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20694687..20695392 | 1..706 | 99 | -> | Plus |
| X | 20695811..20696104 | 707..1000 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:54:43 Download gff for
FMO12559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20565714..20566419 | 1..706 | 99 | -> | Plus |
| arm_X | 20566838..20567131 | 707..1000 | 94 | | Plus |
