FMO12561.5prime Sequence
1132 bp (1046 high quality bases) assembled on 2012-10-30
> FMO12561.5prime
GTCGACATGGCCGATATTCTCAACGTGGAGCAGCACCAAACGGTTCAGGA
GTTCAAGCAGAATCTCGAGGAGCTCATTCCCAACTTGGATGCCAACAAAG
ATGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCAGGTGGGC
TTCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGTACAAGGG
CAAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAGTTCGAGG
CACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATTCAAGACG
GTCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGTCGAGCAT
TTCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAGCTGGCCT
TCTCCGACTGGATTAACTCGAATCTGGGCCACGACAAGGATCTGCAACAT
CTGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCATCAAGGA
TGGTATTCTGCTGTGCAAAATTATCAACCACTCCTGCCCGGACACAATCG
ATGAGCGTGCGATCAACAAGAAGAACCTCACCGTCTACCGGGAGTTTGAG
AACTTGACCCTGGCCTTGGTTTCCTCCCAGGCGATTGGATGCAACATCGT
AAACATCGATGCCCACGATCTGGCCAAGGGCAAGCCACATCTGGTGCTGG
GTCTTCTCTGGCAGATCATCCGCATCGGTCTGTTTAGCCACATCACCCTG
GACAGCTGTCCGGGATTGGCTGGCCTACTCTTCGACAACGAACGTCTCGA
GGATCTGATGAAGATGTCGCCCGGAGGCCATCCTTTTGCGTTGGGTCAAC
CATCATTTGGAGCGAGCCGGCATCTCGAGGCGGTGCACCAACTTCCAGTC
GGACATCGTCGATTCTGAGATCTATTCGCATTTGCTGAAGCAATTGCCGG
CAATGATGCTGATGTCATCTGGATGCCTGCGGGAATTCGATCTGCAGTCG
CGCGCGGGAAATCATGTTGCAGCAGGCCGCCAAGCTCCACTGCCGCAGCT
TTCTTCACGCCACAGAATGTCGTCACGAATTCTACAAGTCAATCTATCCC
TCAGGGCTAATCTGGTTCTACATCCATCAGAT
FMO12561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RD | 3236 | CG8649-RD | 342..1464 | 7..1128 | 5200 | 98 | Plus |
| Fim-RC | 3269 | CG8649-RC | 453..1497 | 85..1128 | 4810 | 97.8 | Plus |
| Fim-RA | 3387 | CG8649-RA | 571..1615 | 85..1128 | 4810 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17288047..17289037 | 1075..85 | 4595 | 98.9 | Minus |
| X | 23542271 | X | 17291251..17291328 | 84..7 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:08 has no hits.
FMO12561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:00 Download gff for
FMO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RD | 336..1432 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:31 Download gff for
FMO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RD | 337..1433 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:06 Download gff for
FMO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RD | 337..1433 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:06 Download gff for
FMO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17288024..17289037 | 85..1096 | 98 | <- | Minus |
| X | 17291251..17291330 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:31 Download gff for
FMO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17182057..17183070 | 85..1096 | 98 | <- | Minus |
| arm_X | 17185284..17185363 | 1..84 | 95 | | Minus |
