FMO12562.5prime Sequence
1068 bp (947 high quality bases) assembled on 2012-10-30
> FMO12562.5prime
GTCGACATGAGCGAATCCGGTGGCTATCAGAAAATGCCGCCCGGCTGGGA
CTGCAAATACGATCAAGCAACTGGAAATTGCTATTACATAAACTATCTGA
CGAAGGCCATGCAGCTGGAGGATCCGCGCGGCCGCAGTTACAGGCAGTTG
CAGAACGAACGCTGTTCCACGGAGTCGATAGCCTTGCAGCAGTTGGTCAG
TCAGCCGCAGACGTCGCACAACAGCTCGCCGTACCACGTCCATCCCAGCA
ACAACTTGACTGCAATTCGGGCCTTCCAGGAGCGCCAGCAACCCACGCTG
CACAACATCTCTACCAGTCCATTGTTGTCGGCCTCCTCCAGGGGACACTT
GGAAATGTCTTCACCTCTGCCCTTTCAACGAGCTCGCGTGGGACCGAATC
TCTCGCGGCGCTCCACCATTCAGGAGACCTCGTTCACCACGCTAGCGGAA
ACGGATGCCGTGGTGACCAAAATCCAGAACATGTTCCCCACCGCTGGCGA
GAACCATATACGTCTCCTGCTCAAGCGCTACTACAATAGCGAGGCGGTTG
TCGTCAGTGCGCTGCAGGTGGAGAAGCACCCGGTTACCATGCCCGGACCC
TTTGTGACGCCCCCTTCGCAGCGGCACCTCTTCCACAGCGGCTCCGCCTT
CTACATGACGCCACCGGCACGTCGGCCGGACACGGTAGCTAGTCGGCGCA
CGTCGCGCACGGCCAGTCCCCTGCCCGGCGGACGCTTCGGTAGTCTCGTG
AGCGTGCAGAGCGGTCCTGGTGGTCCAAGTGGCCATCACGCTGTTCTGCC
TCCCAGCTCGGCTGTTCCGCCGGCTCTGCACGGATCGCCCCTGTGGCGCA
GCTCGCCCAGGCCGCACTCGTCGCCCAAGATGAAGCTGAGATACATGAAG
AATATATCCCCAAGCGGACGAAGAGCTGCTTCTGATATCCTGCAAATGCG
ATACACGTGCCAGTCGCATCGAAAGTTGATTTCTTGGGCTAACACAAAAG
AGATATGCAAACAGCCACAAGACCCACAATCCGCCGGCGACTTATTCAGA
TCAGGAGCTGAAGGAATC
FMO12562.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10508-RK | 2986 | CG10508-RK | 517..1552 | 7..1031 | 4750 | 98.2 | Plus |
| CG10508-RJ | 2983 | CG10508-RJ | 517..1549 | 7..1031 | 4695 | 97.9 | Plus |
| CG10508-RL | 2122 | CG10508-RL | 517..1041 | 7..531 | 2595 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21213128..21213491 | 527..890 | 1805 | 99.7 | Plus |
| 3L | 28110227 | 3L | 21212781..21212957 | 351..527 | 870 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21212224..21212389 | 187..352 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 21212049..21212158 | 80..189 | 550 | 100 | Plus |
| 3L | 28110227 | 3L | 21210731..21210804 | 7..80 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:24:14 has no hits.
FMO12562.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:01 Download gff for
FMO12562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RG | 497..1544 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:35 Download gff for
FMO12562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RK | 511..1558 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:12 Download gff for
FMO12562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RK | 511..1558 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:12 Download gff for
FMO12562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21210725..21210804 | 1..80 | 96 | -> | Plus |
| 3L | 21212050..21212158 | 81..189 | 100 | -> | Plus |
| 3L | 21212227..21212388 | 190..351 | 100 | -> | Plus |
| 3L | 21212782..21212957 | 352..527 | 99 | -> | Plus |
| 3L | 21213129..21213491 | 528..890 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:35 Download gff for
FMO12562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21205150..21205258 | 81..189 | 100 | -> | Plus |
| arm_3L | 21205327..21205488 | 190..351 | 100 | -> | Plus |
| arm_3L | 21206229..21206591 | 528..890 | 99 | -> | Plus |
| arm_3L | 21203825..21203904 | 1..80 | 96 | -> | Plus |
| arm_3L | 21205882..21206057 | 352..527 | 99 | -> | Plus |
