FMO12563.5prime Sequence
1122 bp (1007 high quality bases) assembled on 2012-10-30
> FMO12563.5prime
AGTCGACATGGCGGACGACGAGCAATTCAGCTTGTGCTGGAACAACTTCA
ACACGAATTTGTCGGCCGGCTTCCACGAGTCGCTATGCCGCGGCGACCTG
GTGGACGTCTCGCTGGCCGCCGAGGGCCAAATAGTGAAGGCCCACCGATT
GGTGTTATCCGTCTGCTCGCCCTTCTTCCGCAAGATGTTCACTCAGATGC
CGTCGAACACCCACGCTATCGTATTCCTGAACAACGTCAGCCACTCGGCG
CTGAAGGACCTCATCCAATTCATGTACTGCGGCGAGGTCAACGTGAAGCA
GGACGCCCTGCCCGCGTTTATTAGCACCGCGGAATCGCTGCAAATCAAGG
GGCTAACGGATAACGATCCTGCGCCTCAGCCGCCGCAGGAATCCAGCCCG
CCGCCAGCAGCACCTCATGTACAACAACAGCAAATACCGGCTCATCGGGT
GCAGCGCCAGCAGCCTCGCGCCTCCGCCCGCTACAAGATCGAGACCGTGG
ACGACGGCCTGGGCGACGAGAAACAGAGCACCACCCAGATCGTCATCCAG
ACCACGGCCGCACCCCAAGCCACCATTGTACAACAGCAGCAACCGCAGCA
GGCGGCGCAGCAGATCCAATCGCAGCAGCTGCAGACGGGAACCACGACGA
CGGCGACGCTGGTGTCGACAAACAAACGCTCTGCCCAGCGCTCCTCCCTG
ACCCCCGCCTCCTCGAGCGCCGGCGTAAAGCGCTCCAAGACAAGCACCTC
CGCAAATGTTATGGACCCTCTCGACTCGACCACTGAAACTGGAGCCACGA
CAACCGCCCAACTTGTGCCGCAACAGATCACCGTGCAAACCTCTGTGGTC
TCTGCGGCAGAGCAAAGCTCCACCAGCAATCGCCGCAGCAGGTTCGACAG
GAGGAAGCCGAGTACATTGATCTCCCCATGGAATTGCCCACGAAATCTTG
AACCCTGACTACCTCTGAGGACATGCGACGCCGCCGGCGATGCCGAGGGC
ACCTATGTGAGACGATACCTTACGGAGAAATGCGGCTACGACGAAAGCTA
CTTCACTGAAAACGAGATGCCTGCAACAGACTGCGGCAAAAACAGACGGT
GGCGAATGAACGGCTACCACTT
FMO12563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(mdg4)-RAF | 1839 | CG32491-RF | 159..1275 | 8..1122 | 5100 | 97.9 | Plus |
| mod(mdg4)-RAE | 1596 | CG32491-RAE | 157..1273 | 8..1122 | 5100 | 97.9 | Plus |
| mod(mdg4)-RAD | 1689 | CG32491-RAD | 157..1273 | 8..1122 | 5100 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21375150..21375912 | 1122..362 | 3060 | 96 | Minus |
| 3R | 32079331 | 3R | 21376819..21377032 | 221..8 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 21376602..21376742 | 361..221 | 705 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6698..6922 | 402..634 | 172 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2883 | 551..657 | 138 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2421 | 580..657 | 134 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2397 | 580..651 | 130 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6848 | 521..654 | 130 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6809 | 580..657 | 125 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1157 | 580..657 | 125 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1471..1602 | 519..647 | 122 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6843 | 527..633 | 119 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1057..1144 | 514..601 | 115 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6805 | 580..634 | 113 | 67.3 | Plus |
FMO12563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:02 Download gff for
FMO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RI | 149..1261 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:40 Download gff for
FMO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RAD | 149..1261 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:17 Download gff for
FMO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(mdg4)-RAD | 149..1261 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:17 Download gff for
FMO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21375162..21375912 | 362..1109 | 97 | <- | Minus |
| 3R | 21376602..21376741 | 222..361 | 100 | <- | Minus |
| 3R | 21376819..21377039 | 1..221 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:40 Download gff for
FMO12563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17200884..17201634 | 362..1109 | 97 | <- | Minus |
| arm_3R | 17202324..17202463 | 222..361 | 100 | <- | Minus |
| arm_3R | 17202541..17202761 | 1..221 | 98 | | Minus |
