FMO12565.5prime Sequence
1095 bp (984 high quality bases) assembled on 2012-10-30
> FMO12565.5prime
AGTCGACATGAACACTTGTTTGGAAGGCAACTGCGAGTCGCTGCCCAACT
ATGTGGGTCGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCC
GATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCA
GCCGGAAACAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGC
TCTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGAC
AACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGA
TCGGGTCTTCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTA
TGAGAAAGGGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAAC
GGAGCCCACTGGTATGAGTTGTCCGGTGGAATGCAGGACTTTAACTATGC
GTTTAGCAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAAGTATC
CGGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAGGCATCCCTG
CTGCAGCTGCTGCGCCAGGCACATATCGGCATCAAGGGCCTGGTGACCGA
TGCCAGTGGCTTTCCAATAGCCGATGCCAATGTCTACGTGGCTGGACTAG
AGGAGAAACCCATGCGCACTTCCAAACGTGGCGAATACTGGAGGCTTTTG
ACCCCGGGACTCTATAGCGTGCACGCCTCCGCTTTTGGTTACCAGACCAG
TGCCCCGCAACAGGTCCGGGTGACCAACGATAACCAGGAGGCCTTGCGCC
TGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGCAACTTCCGG
AAGTAAAGGTCGAGCGCTCTGAGCCTCACAGAAGCTCAGAAGCAGTTCAA
TGGGTTCTTGACCCGACTAAATACGACACACACTTTACGGCAATGGAGAG
CTATCTGAGGGCGATAGCAGCAGCTTATCCTTCCCTAACGCCTCTTACAG
CATCCGTAAAGCGTCCAGGTCTGATCTTGGGTGCTGGAACCTGGCCACGC
CGATCCTATGTCCGGGGTCCGGAATCCAAATTGTGGCAACTGTCA
FMO12565.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RI | 5267 | CG4122-RI | 1003..2042 | 8..1035 | 4795 | 98.4 | Plus |
| svr-RN | 4986 | CG4122-RN | 651..1676 | 22..1035 | 4725 | 98.3 | Plus |
| svr-RM | 5611 | CG4122-RM | 651..1676 | 22..1035 | 4725 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 502287..502766 | 259..738 | 2400 | 100 | Plus |
| X | 23542271 | X | 501984..502221 | 22..259 | 1190 | 100 | Plus |
| X | 23542271 | X | 502835..502937 | 738..840 | 515 | 100 | Plus |
| X | 23542271 | X | 504667..504758 | 839..926 | 260 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:24:39 has no hits.
FMO12565.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:03 Download gff for
FMO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RI | 108..1158 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:48 Download gff for
FMO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RC | 995..2045 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:23 Download gff for
FMO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RI | 995..2045 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:23 Download gff for
FMO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 501985..502220 | 23..258 | 100 | -> | Plus |
| X | 502287..502766 | 259..738 | 100 | -> | Plus |
| X | 502836..502936 | 739..839 | 100 | -> | Plus |
| X | 504668..504785 | 840..950 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:48 Download gff for
FMO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 396018..396253 | 23..258 | 100 | -> | Plus |
| arm_X | 396320..396799 | 259..738 | 100 | -> | Plus |
| arm_X | 396869..396969 | 739..839 | 100 | -> | Plus |
| arm_X | 398701..398818 | 840..950 | 94 | -> | Plus |
