Clone FMO12566 Report

Search the DGRC for FMO12566

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:66
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPkn-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12566.5prime Sequence

1106 bp (1010 high quality bases) assembled on 2012-10-30

> FMO12566.5prime
AGTCGACATGTCGGATTCGTATTATCAGGGCGAATACATCAAGCATCCCG
TTCTGTACGAGCTCAGTCACAAATATGGTTTCACAGAGAATCTGCCGGAG
AGCTGTATGTCCATACGGCTGGAGGAGATCAAGGAGGCCATTCGGCGAGA
GATCCGCAAGGAGCTGAAGATCAAAGAGGGCGCCGAGAAGCTCCGCGAGG
TGGCTAAAGATCGACGATCCCTCAGCGATGTGGCCGTTCTTGTCAAGAAG
AGCAAAAGTAAACTTGCCGAGCTGAAGTCCGAGTTGCAGGAGCTCGAGAG
TCAAATCCTCCTGACATCGGCCAACACCGCCGTCAATAGTAATGGACAAG
AATCGATCACTGCCTGCATTGATCCCAATGGCGGCTTCTTGGTCAGCGGT
GCAGTTGGTGGCTTGGGCGGCGGAAACACGGCTCTGGAGGGCGGCGCACC
GGCCACTGCCAATGACAAAGTGCTCGCCTCGCTGGAGAAGCAGCTGCAGA
TCGAGATGAAGGTGAAGACCGGGGCGGAAAACATGATCCAGTCGCTGGGC
ATCGGATGCGACAAGAAGCTGCTGGCGGAAGCCCACCAGATGCTGGCCGA
CTCGAAGGCCAAGATTGAGTTTTTGCGCCTGCGCATCATCAAGGTGAAAC
AGAACCGCGAGCAGGCCGATCGCCTCAAGGCCTCGCGCCAGATGATCGAC
GAGCATGGCCAGACGATCGGCGGGAACAACAGCAGCCAGCCGCAGAGCCT
GTAGACGACGCTGGAGGAGCGAATCGAGGAGCTCCGCCATCGACTGCGAA
TCGAGGCAGCCGTCGTCGATGGAGCCAAGAATGTTATACGCACGCTGCAG
ACGGCGAATAGGGCACCGGACAGAAGGCTTTGCAGGAGCCCATGGACGTT
TGTCGGAATCGTCGCGAAACTAGATCTTCTGCGCTACTCCTTGGATTACG
ACGCCAGGAGCTGCCCGCCGATTCGCCCGCCGCCCAGCATTAAAAACGGA
GCTGCAGATCGTCAGCTATTCGACCTCCCCAGCTCGTCACCTAACCGTCA
TTGCAGTTCCGAACAGCGGCATACTCGGCGGGAAGGCGTAACAGTTCGGA
TCCTCG

FMO12566.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Pkn-RQ 4485 CG2049-RQ 420..1527 7..1106 5065 97.8 Plus
Pkn-RP 4491 CG2049-RP 420..1527 7..1106 5065 97.8 Plus
Pkn-RO 4152 CG2049-RO 420..1527 7..1106 5065 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9265490..9266030 888..349 2640 99.6 Minus
2R 25286936 2R 9267655..9267979 350..26 1625 100 Minus
2R 25286936 2R 9259920..9260144 1106..888 545 88 Minus
Blast to na_te.dros performed on 2014-11-28 18:24:46 has no hits.

FMO12566.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:04 Download gff for FMO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
Pkn-RI 413..1527 1..1106 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:51 Download gff for FMO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
Pkn-RO 413..1527 1..1106 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:26 Download gff for FMO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
Pkn-RO 413..1527 1..1106 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:26 Download gff for FMO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9265490..9266028 351..888 99 <- Minus
2R 9267655..9267976 29..350 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:51 Download gff for FMO12566.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5152995..5153533 351..888 99 <- Minus
arm_2R 5155160..5155481 29..350 100 <- Minus