FMO12566.5prime Sequence
1106 bp (1010 high quality bases) assembled on 2012-10-30
> FMO12566.5prime
AGTCGACATGTCGGATTCGTATTATCAGGGCGAATACATCAAGCATCCCG
TTCTGTACGAGCTCAGTCACAAATATGGTTTCACAGAGAATCTGCCGGAG
AGCTGTATGTCCATACGGCTGGAGGAGATCAAGGAGGCCATTCGGCGAGA
GATCCGCAAGGAGCTGAAGATCAAAGAGGGCGCCGAGAAGCTCCGCGAGG
TGGCTAAAGATCGACGATCCCTCAGCGATGTGGCCGTTCTTGTCAAGAAG
AGCAAAAGTAAACTTGCCGAGCTGAAGTCCGAGTTGCAGGAGCTCGAGAG
TCAAATCCTCCTGACATCGGCCAACACCGCCGTCAATAGTAATGGACAAG
AATCGATCACTGCCTGCATTGATCCCAATGGCGGCTTCTTGGTCAGCGGT
GCAGTTGGTGGCTTGGGCGGCGGAAACACGGCTCTGGAGGGCGGCGCACC
GGCCACTGCCAATGACAAAGTGCTCGCCTCGCTGGAGAAGCAGCTGCAGA
TCGAGATGAAGGTGAAGACCGGGGCGGAAAACATGATCCAGTCGCTGGGC
ATCGGATGCGACAAGAAGCTGCTGGCGGAAGCCCACCAGATGCTGGCCGA
CTCGAAGGCCAAGATTGAGTTTTTGCGCCTGCGCATCATCAAGGTGAAAC
AGAACCGCGAGCAGGCCGATCGCCTCAAGGCCTCGCGCCAGATGATCGAC
GAGCATGGCCAGACGATCGGCGGGAACAACAGCAGCCAGCCGCAGAGCCT
GTAGACGACGCTGGAGGAGCGAATCGAGGAGCTCCGCCATCGACTGCGAA
TCGAGGCAGCCGTCGTCGATGGAGCCAAGAATGTTATACGCACGCTGCAG
ACGGCGAATAGGGCACCGGACAGAAGGCTTTGCAGGAGCCCATGGACGTT
TGTCGGAATCGTCGCGAAACTAGATCTTCTGCGCTACTCCTTGGATTACG
ACGCCAGGAGCTGCCCGCCGATTCGCCCGCCGCCCAGCATTAAAAACGGA
GCTGCAGATCGTCAGCTATTCGACCTCCCCAGCTCGTCACCTAACCGTCA
TTGCAGTTCCGAACAGCGGCATACTCGGCGGGAAGGCGTAACAGTTCGGA
TCCTCG
FMO12566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pkn-RQ | 4485 | CG2049-RQ | 420..1527 | 7..1106 | 5065 | 97.8 | Plus |
Pkn-RP | 4491 | CG2049-RP | 420..1527 | 7..1106 | 5065 | 97.8 | Plus |
Pkn-RO | 4152 | CG2049-RO | 420..1527 | 7..1106 | 5065 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9265490..9266030 | 888..349 | 2640 | 99.6 | Minus |
2R | 25286936 | 2R | 9267655..9267979 | 350..26 | 1625 | 100 | Minus |
2R | 25286936 | 2R | 9259920..9260144 | 1106..888 | 545 | 88 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:46 has no hits.
FMO12566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:04 Download gff for
FMO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkn-RI | 413..1527 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:51 Download gff for
FMO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkn-RO | 413..1527 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:26 Download gff for
FMO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pkn-RO | 413..1527 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:26 Download gff for
FMO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9265490..9266028 | 351..888 | 99 | <- | Minus |
2R | 9267655..9267976 | 29..350 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:51 Download gff for
FMO12566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5152995..5153533 | 351..888 | 99 | <- | Minus |
arm_2R | 5155160..5155481 | 29..350 | 100 | <- | Minus |