FMO12568.5prime Sequence
1063 bp (955 high quality bases) assembled on 2012-10-30
> FMO12568.5prime
AGTCGACATGGGACACCTGACGCGACGCAGCAGCCTAATGGCCATAGTCC
TGTGCCTGGTACTCAACACACAGCACCTGTCGGTGCATGGCGATGCCTCG
CACATTGAGTCCGCCGCCCTGCCACTCGAACACAGGGCCGGCTACGGTCC
ACCGGCGCCCATTTACGGTGCGCCCCAGGGACCACTGAGCACCGGAGCCA
CCAACGATGTGTCCGAGGAGGCATGGCCCCTCGCCAGCACCAACGACAGT
CCGCAGATCAAGCACCTGCAGGTGCAGTGCGAGAAGACCCACATGCGGGT
GAACATCGAGTTCGACCGACCTTTCTACGGCATGATCTTCTCCAAGGGAT
TCTACAGTGATCCACACTGCGTGCACCTGAAGCCCGGCACCGGCCACCTG
AGCGCCACCTTTGAGATCTTCCTGAATAGCTGCGGCATGACTTTCTCGGC
CAACCACAATGCCGCCGGCTATGGAGCGCCCACGCCATCGGGCAGCTATG
TGGAGAACACGATCATCATCCAGTACGATCCCTATGTGCAGGAGGTGTGG
GATCAGGCCAGGAAGCTGCGCTGCACCTGGTACGATTTCTACGAGAAGGC
CGTCACCTTCAGGCCCTTCCAGGTGGACATGCTGCATGCGGTGACCGCTA
ACTTCCTGGGCGACAACCTGCAGTGCTGGATGCAAATCCAGGTGGGCAAG
GGACCCTGGGCCTCCGAGGTTTCGGGCATTGTCAAGATCGGACAGACGAT
GACCATGGTGCTGGCCATCAAGGATGATGAAAACAAATTCGATATGCTAG
TGCGCAACTGTGTGGCCCACGACGGCAAGCGGGCTCCCATCCAGCTGGTG
GATCAGAATGGCTGCGTTGTCAGGCCCAGATCATGAGCAAGTTCCAGAAG
ATCAGAACTTCGGACCCTCCGCATCGGTGGTAGCTTCGCCTACTTCCAGC
CTTCCAGGTCCCGACTCGATGAATGTGCACTTCCGTGCGTCATCAAGTGT
GCCGCTACAACTGTTCCGAGCCATGCCGTTCCCATGCGATGCAGTACGGT
CTGCCCGATGGAA
FMO12568.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dyl-RC | 2778 | CG15013-RC | 425..1446 | 8..1022 | 4830 | 98.6 | Plus |
| dyl-RA | 2690 | CG15013-RA | 337..1358 | 8..1022 | 4830 | 98.6 | Plus |
| dyl-RB | 2890 | CG15013-RB | 537..1558 | 8..1022 | 4830 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4295336..4296296 | 1022..69 | 4355 | 98.3 | Minus |
| X | 23542271 | X | 11771695..11772048 | 856..503 | 780 | 81.4 | Minus |
| 3L | 28110227 | 3L | 4298530..4298595 | 73..8 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:53 has no hits.
FMO12568.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:05 Download gff for
FMO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dyl-RC | 416..1492 | 1..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:56 Download gff for
FMO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dyl-RB | 529..1605 | 1..1063 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:30 Download gff for
FMO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dyl-RB | 529..1605 | 1..1063 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:30 Download gff for
FMO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4295283..4296291 | 74..1063 | 96 | <- | Minus |
| 3L | 4298530..4298601 | 1..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:56 Download gff for
FMO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4295283..4296291 | 74..1063 | 96 | <- | Minus |
| arm_3L | 4298530..4298601 | 1..73 | 95 | | Minus |
