FMO12569.5prime Sequence
1103 bp (954 high quality bases) assembled on 2012-10-30
> FMO12569.5prime
TCGACATGAGCGAGCAGAAAACGAGTGGGAGTGGGTCGGCGGCCGCTGCC
CGTCTGCAAATCGAGGCGGAGTACAAGGACAAGGGGCCGCAATGGCATCG
CTTCTACAAGGAAATTTGTGAGACCTGCGACCGGGAGGCGAAGGAGAAGC
AGTTCAGCACCTCGGAATCGGAACGCCACACGAACCGCGGCCTGAATCGC
TATCGGGATGTGAATCCGTACGATCATTCCCGCATTGTTTTGAAGCGCGG
CAGCGTAGACTACATCAATGCGAACCTGGTTCAGCTGGAGCGCGCCGAGC
GCCAGTACATCCTGACCCAAGGACCGCTGGTGGACACAGTGGGCCACTTC
TGGCTGATGGTATGGGAGCAGAAGTCCAGAGCAGTTCTCATGCTCAACAA
GCTGATGGAGAAGAAACAGATCAAGTGCCACCTCTACTGGCCCAACTAGA
TGGGAGCCGACAAGGCCCTGAAACTGCCCCACGTCAAACTCACCGTGGAG
CTCGTCCGTCTCGAGACCTACCAGAACTTTGTGCGGCGATGGTTCAAATT
AACCGATCTCGAAACGCAGCAGAGTCGTGAAGTGATGCAGTTCCACTACA
CCACATGGCCGGACTTTGGCATTCCCAGCTCGCCGAACGCATTCCTTAAG
TTCTTGCAGCAGGTTCGCGACTCCGGCTGCCTCAGCCGCGACGTGGGTCC
AGCCGTAGTGCACTGCAGTGCCGGAATCGGGCGGTCGGGCACCTTCTGCC
TGGTGGACTGTTGCCTGTACTTATCGACAGTACGGAGAGTGCAATGTGTC
CAAGGTGCTCTGCGAGCTGCGCAGCTACCGCATGGGCCTCATACAGACCG
CCGACCAGCTGGACTTCTCCTACCAGGCGATCATCGAGGGCATAAAAGCT
GCACGATCCCACCTTTCTTGACGCTGAAGAACCCTCATTAGCACGACCAA
GGAGACTCACACACTGGATGGGCTGCCGCCGCCATTGCCCCCACGCGTCC
AATCGATTAATCTTGCCACTGACCCCAATTTCGGCGGTAATCCTTCGCTC
ATATGCGCGGCGGCCCAGCTATGAACCTGAAGTATCGCCAGAAGCCTGTG
AAC
FMO12569.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp61F-RA | 2115 | CG9181-RA | 124..1213 | 6..1087 | 4945 | 97.6 | Plus |
| Ptp61F-RB | 1835 | CG9181-RB | 124..1213 | 6..1087 | 4945 | 97.6 | Plus |
| Ptp61F-RC | 1796 | CG9181-RC | 187..1174 | 108..1087 | 4435 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1345498..1345864 | 910..548 | 1670 | 98.9 | Minus |
| 3L | 28110227 | 3L | 1345943..1346207 | 547..283 | 1310 | 99.6 | Minus |
| 3L | 28110227 | 3L | 1346273..1346452 | 288..109 | 885 | 99.4 | Minus |
| 3L | 28110227 | 3L | 1350366..1350476 | 116..6 | 540 | 99.1 | Minus |
| 3L | 28110227 | 3L | 1345020..1345161 | 1051..911 | 375 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:00 has no hits.
FMO12569.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:06 Download gff for
FMO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp61F-RA | 184..1240 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:01 Download gff for
FMO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp61F-RB | 118..1174 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:33 Download gff for
FMO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp61F-RB | 118..1174 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:33 Download gff for
FMO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1345498..1345864 | 548..910 | 98 | <- | Minus |
| 3L | 1345943..1346205 | 285..547 | 99 | <- | Minus |
| 3L | 1346277..1346450 | 111..284 | 100 | <- | Minus |
| 3L | 1350372..1350478 | 1..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:01 Download gff for
FMO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1346277..1346450 | 111..284 | 100 | <- | Minus |
| arm_3L | 1345498..1345864 | 548..910 | 98 | <- | Minus |
| arm_3L | 1345943..1346205 | 285..547 | 99 | <- | Minus |
| arm_3L | 1350372..1350478 | 1..110 | 97 | | Minus |
