FMO12570.5prime Sequence
1127 bp (1006 high quality bases) assembled on 2012-10-30
> FMO12570.5prime
CGACATGTTTAAAAAACTTAAGCCAGGTGAAAGTGAGGAGGATGTCCTGC
GAATGGCAGCAGAGTTCAATGCAGAGAGAGCGAAGGATCCCAATTTCCAG
CCTGCAGCGGCTTTTGTGCGTATGGATAAAGCTCCTAAAAAGTCCATGTT
TGCGCAAAGACGGGAGCAGGCAAAATTGGGGCGTGTTACTTCTACTACGG
AAAAAAACGAGGAGCAAATTCAACCAGTGCCCAAAGAAATCATCCCTCAG
ATTCCAACAAGTGTCCCAAAAGAACGTGGGTCGCATGTCAGCCAAGTTTT
GCTTGATGAAATCCAGGAAAACATCCTGGGCGATGTGAAGGGCAGCAAGA
TGGATCCAAGTTCCCTAGGCAATGTGCTGGGCGAATTGGTAGAAAGAACT
GAAGGAACCAGGAGATCTGCATTTCCAGAAACTAAAAATGTTGACTCCAG
TAAGCCGCTTAGCATTTTCGCCAAACAACTTTTAGGTGCAAAGTCTTCAA
CTAAGGAAAAATCAAACAAAGTGTCGGATTTTCCAAGAAATGATACAAGT
TCCATAATAAAAGATGCTAAACTGGGAAAAGAACTGCATCAGGAAAACCT
AAATGTACTCAAGCAAATGAATGAACAAGATATTTTGACAGAGAAAGAAA
GATTGCTGGCTTCTTTGGATCCCTCGTTGATAGCTTTGTTGTCCAAGAAA
CGTCAAACGACACCAAATTCCAAACCGCCCAATCCAAATTCACCTAAAGT
AATAGAAGCACCACCCATGCCCGCACAGTCTACAAGAGCCCAAGATCCAC
AAATTTCTTCTTTAACCGATGGAAATCCAGCAATTGAGCTATTGCAAGAG
AGCGATAAAGGAATTGGCTTATTTTCAATCTAGTCGAGGAGCATAAATTG
GCGTGATGCGGGACATTCCCGCCAAGATAGTGAATTGAAGCCTGCAGAGC
AGTTCAATGCTCGCTTTGATGGAAAGGGGTGCTACTGCCCCACACGCCTC
AAGGATCAGGATGCATCGAAACAAATCGATGGAGCGGTGACTTTATTAAA
TGGGCGGGGGAAGGCGAATCGTTCCGGCTACGCATTACAGGAGGCTATTT
CGATTTAGCCGAATCCCACGGTCTTAA
FMO12570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32104-RB | 3768 | CG32104-RB | 56..1174 | 5..1126 | 5065 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12398758..12399069 | 441..130 | 1560 | 100 | Minus |
| 3L | 28110227 | 3L | 12397978..12398414 | 1105..668 | 1540 | 94.1 | Minus |
| 3L | 28110227 | 3L | 12398474..12398702 | 668..440 | 1145 | 100 | Minus |
| 3L | 28110227 | 3L | 12399141..12399267 | 131..5 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:23:46 has no hits.
FMO12570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:58 Download gff for
FMO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32104-RB | 20..1054 | 1..1031 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:18 Download gff for
FMO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32104-RB | 51..1085 | 1..1031 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:52 Download gff for
FMO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32104-RB | 51..1085 | 1..1031 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:52 Download gff for
FMO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12398048..12398413 | 669..1031 | 97 | <- | Minus |
| 3L | 12398474..12398702 | 440..668 | 100 | <- | Minus |
| 3L | 12398760..12399067 | 132..439 | 100 | <- | Minus |
| 3L | 12399141..12399268 | 1..131 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:18 Download gff for
FMO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12391860..12392167 | 132..439 | 100 | <- | Minus |
| arm_3L | 12391148..12391513 | 669..1031 | 97 | <- | Minus |
| arm_3L | 12391574..12391802 | 440..668 | 100 | <- | Minus |
| arm_3L | 12392241..12392368 | 1..131 | 97 | | Minus |
