FMO12571.5prime Sequence
1080 bp (962 high quality bases) assembled on 2012-10-30
> FMO12571.5prime
GTCGACATGGCAAGTTCGCTCAACAAGACGAGACACAGGCGCAGACTGGC
TGCGATCTCGTTCCTATCGAATATCTCGTTAGATGGCACCCATCGGGACA
CCAAATTCGGCGCAACATTCGGCAGCAGCCTGCTCTGCAACCAGAATAAG
AACCCATCCTCGCTGGGACTCGGCTCGGGGGGCTTTCATCCGCACTATCA
GCAGCACCACCATCAGCGCAGCCACTCGGCGACGCACCACAACCACCAGA
AGCGGCATCACACGCAGCAGCAGCAGCAACAGCAACAACAGCAACACACC
CAACAGCAGCAGCAGCAGCAGCAACATCAGCAGCAGCATCAGCAGCAGCA
GCAACACCAGAATGGCGCCCTCTGTTCGCCGCTCCTCTGCAGCGCCGATG
TCCACATGGGCATCGATGGCGGCATCGGGCTGGGATTGGGACTGGAGGAC
TGCACCACCGGTGCCAGCGATGGGGACGGGCATTTTAGTGAAACTGAAAA
TATGGGTCAATACCTGATGAACGTCCTGCCGGCCGCCGATCACAATCGCA
GCAGCATTGTGCCGGCCGAGAGACGCAACATAAAGCGCCCGACCTCGTCG
GGTCGTCATAACCACCAGGCACCGGGCAATGGCAATATGGGCAATAAGCT
CCAACAGCAGCAGCAGCAGCAGCACAAGTTGCAGCAGCAACAGCGGCAGG
CACGAAGTTGCGCCGCCGGCAGCGGAGGATCGGGTGCCGAGAGTGGCAGC
GATTCGGACAGCGTCAAGATACCGCTCAAGGTGTCCAATCTGGGCAGCGG
CGGTGGCGTGGCCCGGCGGAGCGGGCAGCAAGCTATTGCCGCTGAGGGAA
CGCACCTTCAGCAATGGGGCAAGCGATCAGAACTTGCAGCCGGAGCGGAG
GGCACGTTTGAACACGGCGCCGGGTATGCGGTGGCTTCAATTCGAGCATT
GCCATGGGGCGGGCGATCTGAACGCACCTATGTCTTGGAGTGATCGAGCG
TTAGCCCATCACGACGAACAGCAGCACAGAAAGCTGATCGGCGGGTAACT
ATGTCGGCAGTCGAACGCCTCACAAGTCGT
FMO12571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6191-RC | 3439 | CG6191-RC | 881..1939 | 7..1061 | 4865 | 98 | Plus |
| CG6191-RB | 3745 | CG6191-RB | 881..1939 | 7..1061 | 4865 | 98 | Plus |
| CG6191-RA | 3439 | CG6191-RA | 881..1939 | 7..1061 | 4865 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13590600..13591444 | 852..7 | 4180 | 99.9 | Minus |
| 2R | 25286936 | 2R | 13583428..13583583 | 1006..852 | 490 | 91.8 | Minus |
Blast to na_te.dros performed 2014-11-28 18:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2479 | 176..365 | 378 | 70.7 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 609..722 | 830..710 | 139 | 61.5 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1033 | 187..238 | 109 | 69.8 | Plus |
FMO12571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:58 Download gff for
FMO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 873..1910 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:24 Download gff for
FMO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 876..1913 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:58 Download gff for
FMO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 876..1913 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:58 Download gff for
FMO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13583395..13583582 | 853..1037 | 92 | <- | Minus |
| 2R | 13590600..13591449 | 1..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:24 Download gff for
FMO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9470900..9471087 | 853..1037 | 92 | <- | Minus |
| arm_2R | 9478105..9478954 | 1..852 | 99 | | Minus |
