Clone FMO12572 Report

Search the DGRC for FMO12572

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:72
Vector:pMK33-CFH-BD
Associated Gene/Transcriptslpr-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12572.5prime Sequence

1091 bp (991 high quality bases) assembled on 2012-10-30

> FMO12572.5prime
TCGACATGCCCTCGCAGGTCTCCCGAGGATTGGACACCACCAACATGCTG
CCGATCAGCGAGGAGCAGCAGCTGCAACAGCAGCAGCAGCAGCAGCAGTT
AGAGCAACTGCATCATCCGCAGATACCAGAGATTCCCATACCAGATCTAG
AGCAAGTCGAGACCCAGGTGGGCGATGGCAGCCTGTGGACCGCGCTGTAT
GACTACGATGCCCAGGGCGAGGATGAGCTGACACTGCGACGCGGCGAAAT
CGTTGTGGTCCTGTCCACGGACAGCGAGGTGTCTGGCGATGTGGGCTGGT
GGACCGGCAAGATTGGAGATAAGGTCGGTGTCTTTCCCAAGGACTTTGTC
ACCGATGAGGACCCACTGCAACTGAATGTCTCGTCCGCCATTGGCGACAT
CCAGCCGCATGAGATCGAATACAATGAGCTGGACATCAAGGAAGTTATCG
GCTCCGGTGGCTTCTGCAAGGTCCATCGTGGCTACTACGATGGCGAGGAG
GTGGCTATTAAGATTGCCCATCAAACGGGCGAGGATGATATGCAGAGGAT
GCGGGACAATGTCCTGCAGGAGGCCAAACTGTTTTGGGCCCTCAAGCACG
AAAATATAGCAGCCCTGCGAGGAGTATGTCTGAATACCAAACTCTGTCTG
GTGATGGAGTATGCCAGGGGAGGAAGTCTCAATCGCATACTGGCTGGCAA
GATACCACCCGATGTACTAGTCAACTGGGCCATTCAGATAGCCAGAGGCA
TGAACTATCTGCACAATGAGGCGCCCATGTCGATCATACATCGCGACCTC
AAGTCCTCCAATGTGCTGATCTACGAGGCCATCGAGGGCATCATCTGCAG
CAGAGACGCTCAGATCACGGATTTCGGTTTGGCCAGGGAGATGTACAACA
CGCAGAGGATGAGTGCGGCGGGCACGTACGCTTGGAATGCCACCGGAAGG
TCATCAGCGTTAGCACCTAATCCCAAATTCTCGGATTGTTTGAGCCTACG
GTGTCTTGCCTGTGGGACTGAATACGGGCGAGACGCCCTACAGGGCTTCG
GATCCGTGTTCGTTGTCTATAGCGTGGGCTGTTAACAGCCT

FMO12572.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
slpr-RD 4945 CG2272-RD 557..1637 6..1087 4950 97.9 Plus
slpr-RC 5594 CG2272-RC 756..1836 6..1087 4950 97.9 Plus
slpr-RB 5165 CG2272-RB 756..1836 6..1087 4950 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8175304..8175956 973..322 3010 99.1 Minus
X 23542271 X 8176013..8176332 325..6 1600 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:24:03 has no hits.

FMO12572.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:59 Download gff for FMO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
slpr-RC 485..1546 1..1063 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:28 Download gff for FMO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
slpr-RB 752..1813 1..1063 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:02 Download gff for FMO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
slpr-RB 752..1813 1..1063 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:02 Download gff for FMO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8175302..8175954 324..976 98 <- Minus
X 8176015..8176334 1..323 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:28 Download gff for FMO12572.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8069335..8069987 324..976 98 <- Minus
arm_X 8070048..8070367 1..323 99   Minus