FMO12572.5prime Sequence
1091 bp (991 high quality bases) assembled on 2012-10-30
> FMO12572.5prime
TCGACATGCCCTCGCAGGTCTCCCGAGGATTGGACACCACCAACATGCTG
CCGATCAGCGAGGAGCAGCAGCTGCAACAGCAGCAGCAGCAGCAGCAGTT
AGAGCAACTGCATCATCCGCAGATACCAGAGATTCCCATACCAGATCTAG
AGCAAGTCGAGACCCAGGTGGGCGATGGCAGCCTGTGGACCGCGCTGTAT
GACTACGATGCCCAGGGCGAGGATGAGCTGACACTGCGACGCGGCGAAAT
CGTTGTGGTCCTGTCCACGGACAGCGAGGTGTCTGGCGATGTGGGCTGGT
GGACCGGCAAGATTGGAGATAAGGTCGGTGTCTTTCCCAAGGACTTTGTC
ACCGATGAGGACCCACTGCAACTGAATGTCTCGTCCGCCATTGGCGACAT
CCAGCCGCATGAGATCGAATACAATGAGCTGGACATCAAGGAAGTTATCG
GCTCCGGTGGCTTCTGCAAGGTCCATCGTGGCTACTACGATGGCGAGGAG
GTGGCTATTAAGATTGCCCATCAAACGGGCGAGGATGATATGCAGAGGAT
GCGGGACAATGTCCTGCAGGAGGCCAAACTGTTTTGGGCCCTCAAGCACG
AAAATATAGCAGCCCTGCGAGGAGTATGTCTGAATACCAAACTCTGTCTG
GTGATGGAGTATGCCAGGGGAGGAAGTCTCAATCGCATACTGGCTGGCAA
GATACCACCCGATGTACTAGTCAACTGGGCCATTCAGATAGCCAGAGGCA
TGAACTATCTGCACAATGAGGCGCCCATGTCGATCATACATCGCGACCTC
AAGTCCTCCAATGTGCTGATCTACGAGGCCATCGAGGGCATCATCTGCAG
CAGAGACGCTCAGATCACGGATTTCGGTTTGGCCAGGGAGATGTACAACA
CGCAGAGGATGAGTGCGGCGGGCACGTACGCTTGGAATGCCACCGGAAGG
TCATCAGCGTTAGCACCTAATCCCAAATTCTCGGATTGTTTGAGCCTACG
GTGTCTTGCCTGTGGGACTGAATACGGGCGAGACGCCCTACAGGGCTTCG
GATCCGTGTTCGTTGTCTATAGCGTGGGCTGTTAACAGCCT
FMO12572.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slpr-RD | 4945 | CG2272-RD | 557..1637 | 6..1087 | 4950 | 97.9 | Plus |
slpr-RC | 5594 | CG2272-RC | 756..1836 | 6..1087 | 4950 | 97.9 | Plus |
slpr-RB | 5165 | CG2272-RB | 756..1836 | 6..1087 | 4950 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8175304..8175956 | 973..322 | 3010 | 99.1 | Minus |
X | 23542271 | X | 8176013..8176332 | 325..6 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:24:03 has no hits.
FMO12572.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:54:59 Download gff for
FMO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slpr-RC | 485..1546 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:55:28 Download gff for
FMO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slpr-RB | 752..1813 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:02 Download gff for
FMO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slpr-RB | 752..1813 | 1..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:02 Download gff for
FMO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8175302..8175954 | 324..976 | 98 | <- | Minus |
X | 8176015..8176334 | 1..323 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:55:28 Download gff for
FMO12572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8069335..8069987 | 324..976 | 98 | <- | Minus |
arm_X | 8070048..8070367 | 1..323 | 99 | | Minus |