FMO12573.5prime Sequence
639 bp (625 high quality bases) assembled on 2012-10-30
> FMO12573.5prime
GTCGACATGGGTTTCATTGCGGAGCGAAAGCCGCGTGTCAACAAGACGTT
GATCTCGCTCAAGTTTGTTGTGTTCTTCGTAATAACCGGTCTTACAGCTT
TGCATGTTTTGCATGCCACCAAGCCACTGATCCTGGGTCTAAACTTCTCG
GAATACCGGACCATTACTATTTTGGCGCCATTCGTCTCCATTTTGGGTCC
TTTGATCGCTGGTCCCTGGGCAGATCGATTGGCAGCCAAGAACCCCAATA
CTTTTGGAAAGACTCTGCGAGTGCTAACTGCCGTCTTCTTGCTGATCTCG
GCCTTCATATATGCCTTTCTGTTTGCCGTGCCGGAAGTTACCCGAAGGGG
AGAGATACGTGAGCCGTTGGTCAGCTTTGGCTGCGATGAAACTGGAGGAT
TCTTGTTCCAGGAGCGCTGTGGCTCGAACGCCACTTGCAGTCGGTGGGAT
CAGAAGGAGGGCAAAATCAACCTGACGCGTTGCACCTACAGTTGCCAGAA
TCCCAAGCTCTATGAGCCCCTCTATGTGGCTTGGTTGGCTGAGGTACCCA
CGGTGGCTCCTTCAACCGAGCAGAGTTCGGAGTTTGATTACGAAGATGAG
GGCATACTGCGGTAACCGAAAGTTTGCGCACCAGGAAGT
FMO12573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP1173-RB | 3066 | CG10121-RB | 202..832 | 7..636 | 3100 | 99.5 | Plus |
| SP1173-RA | 2832 | CG10121-RA | 340..970 | 7..636 | 3100 | 99.5 | Plus |
| SP1173-RD | 3661 | CG10121-RD | 797..1427 | 7..636 | 3100 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6691756..6692305 | 636..88 | 2670 | 99.5 | Minus |
| 3L | 28110227 | 3L | 6692370..6692453 | 90..7 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:26 has no hits.
FMO12573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:08 Download gff for
FMO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RA | 311..948 | 1..639 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:19 Download gff for
FMO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RD | 791..1428 | 1..639 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:49 Download gff for
FMO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RD | 791..1428 | 1..639 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:49 Download gff for
FMO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6691753..6692304 | 89..639 | 99 | <- | Minus |
| 3L | 6692372..6692457 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:19 Download gff for
FMO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6684853..6685404 | 89..639 | 99 | <- | Minus |
| arm_3L | 6685472..6685557 | 1..88 | 95 | | Minus |
