FMO12574.5prime Sequence
1091 bp (955 high quality bases) assembled on 2012-10-30
> FMO12574.5prime
AGTCGACATGCGGCGTCACTTACAGTGGAGCATTAAGCAGCTAACAGCGA
GTTACTCAGATGGTCAGCTGTCTCCTCGCCGGGTGACCGAAGATGCTCTG
CAAGATGCCCTGCGGTGGAAGACACTGAATGCCTTTGTGCGCCTCACGCC
GGAACAGGCGGGGCAGCAGGCCCAGGACGCGGAGCAGCGCTATAAGCTAA
GGCAACCGATTAGTGATCTTGATGGAGTCACCATTGCCATCAAGGACAAC
TTTTGCACCAAAGATGTACACACCACCTGTGCCTCACGGATGCTGCAAGA
CTTTGTGCCTCCCTATGATGCCACTGTGTGCTCCAGACTTAAACAAGCCG
GCGCTGTAATTCTGGGCAAGACGAATATGGATCAGTTTGCCATGGGCGCC
GGCACTGTGGACTCCCTGTACGGGCCGACTAAGAACATCTGGAGCGAGTT
CCTTAACAAGGATCACTGGCGCATCGCGGGCGGCAGTTCTGGAGGCTCTG
CATCCGCCGTAGCCGCGGGTCTTTGTTATGCAGCAATTGGTTCGGACACG
GGTGGCTCCACCCGAAACCCGGCTTCGTACTGCGGCGTGGTGGGTCTAAA
GCCCACCTACGGCCTCGTCTCCCGCCACGGTCTTATTCCGCTGGTCAATT
CCATGGACGTGCCCGGCATTTTTGCCCGCTCCGTCAGCGATTGCGTGGCG
GTACTGAATACAGTGGCAGGGCCCGGATAAACTGGACTCCACAACCATCA
TGCAGCCTTTTACCAGGTTACATCTGCCGGAGTTGGGCAAATTGACCTGA
GCACTGTGCGCATAGGAATACCAAAGGAATACCATTGCCACGGTCTTTCC
GCCGAAGTTCTGGAAACGTGTCCTAAGTGGCCGATTTGCTGGAGTGTAGC
GGTGCCTCCGTCAGACAGGTTTCCCTGCCCATACGGCAGCAAGTTATATT
CGTGTACCCCATTTCTTAATCAGTGCGAAGTGGCCAGCACCATGGCAAGT
TATGATGGAATCGAGTACGCCACCTGGCACAAAACGAAGCGCCACACGGA
CATTGATTGCCCTATTCAGGACGAGGGATTCAACGAATGTG
FMO12574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gatA-RA | 1661 | CG6007-RA | 107..1188 | 8..1086 | 4840 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19026717..19027204 | 1019..532 | 2035 | 97.1 | Minus |
| 3R | 32079331 | 3R | 19028417..19028668 | 289..38 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 19028115..19028358 | 531..288 | 1190 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:25:33 has no hits.
FMO12574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:09 Download gff for
FMO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 80..1097 | 1..1019 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:24 Download gff for
FMO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 80..1097 | 1..1019 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:52 Download gff for
FMO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 101..1118 | 1..1019 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:52 Download gff for
FMO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19026717..19027204 | 532..1019 | 97 | <- | Minus |
| 3R | 19028115..19028357 | 289..531 | 99 | <- | Minus |
| 3R | 19028418..19028665 | 41..288 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:24 Download gff for
FMO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14852439..14852926 | 532..1019 | 97 | <- | Minus |
| arm_3R | 14853837..14854079 | 289..531 | 99 | <- | Minus |
| arm_3R | 14854140..14854387 | 41..288 | 100 | <- | Minus |
