Clone FMO12575 Report

Search the DGRC for FMO12575

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:125
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptEnt3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12575.5prime Sequence

1123 bp (1004 high quality bases) assembled on 2012-10-30

> FMO12575.5prime
AGTCGACATGGATGTTGGTGGCCAGGAAACCCCCTATGAGCCGCTGGACG
GACGTGGTTCCGGGCGTTCGAGGAGCAGTCATTCCACAACCGGATCCGGC
CTGAGGCGTCCAGGCAGCATGGACAGTCCGGAGTTCGATAACCGTGCACC
CAAGGATCAGAGGCACTCCGTCTACCTGGCCCTACTGGCAGCGGGCATTG
GTTTTGTGTTGCCCTACAATAGTTTCATTATTGCGGCGGACTACTGGCAG
GCACGATTCCCGGGTCGCCCGGTAGCCCTGGACATGTCGATGACATACAT
CTTCGTTGCCTTCGGCACCGTTTTGATGAACAACATTGTGCTATCGGTGG
CACCGTTCCAGTCGCGAGTGCTCTTTGGCTACATGATATCCTTCACCACA
CTGATCTTTGTCGCGGTGTGCGAGGTGGCTTGGCATATGTTCGCCACAAA
TACCGCCTATTTGGTGAATATGTCAGCTGTTGCCCTGACCGCCATCGGAT
GTACTGTGCAGCAGTCGAGCTTCTATGGATTCGCCTCCATGCTGCCCAAG
CAGTATACCCAGGCGGTGATGGCCGGCGAGAGTATCGCCGGTTTCCTGGT
GTCTTCCAATCGGGTCGTTACCAAATTGCTGATTAACAACGATCGCGTGT
CCACGGTGATCTTCTTTTTGACCTCAACGCTCTACATACTCTTCAGCTAC
CTGTTGCATGTGGCCACCATTAACTCGCCGTTTGTGCGGTTCCATGTGGA
GGCCTGCTCCAAGATCGTTTTGCGGCCGGATGAGCAGGAGATTGATGGAG
TTCCAAGTAGTACTCGATATGGTGTGCTCTCGATGGACGGTACCCACACC
ACGACCACATCGGGTTGGACCTCCAGGCACTGGAAATACCCTTAGTTTTA
GCAATCCCGTCTACGAGCTATCCAACCCGACTGCCGGCGAAGAGTAGCAT
TGAAGCCCTTCGGACAGCTGCCCGACTTCCGGCCACGCCCCAGGCTCAGG
AGCTACAACGCCCACGACGTGCCTTCCAAGTGATACCGTTATTCACTGCC
ACGTCGTTGCCGGCCAGCAAGTGGTGAACTTCCGTAGGGAATTCTGACCG
ATGCCATGTCAGGGATCTACCGC

FMO12575.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ent3-RC 3363 CG11010-RC 403..1469 7..1072 4980 98.3 Plus
Ent3-RA 2839 CG11010-RA 403..1469 7..1072 4980 98.3 Plus
Ent3-RB 3360 CG11010-RB 403..1466 7..1072 4925 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12854450..12855013 221..784 2820 100 Plus
3L 28110227 3L 12854048..12854263 7..222 1065 99.5 Plus
3L 28110227 3L 12855186..12855421 783..1019 915 97.1 Plus
Blast to na_te.dros performed on 2014-11-28 18:25:39 has no hits.

FMO12575.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:10 Download gff for FMO12575.5prime
Subject Subject Range Query Range Percent Splice Strand
Ent3-RA 388..1472 1..1084 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:28 Download gff for FMO12575.5prime
Subject Subject Range Query Range Percent Splice Strand
Ent3-RA 398..1482 1..1084 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:55 Download gff for FMO12575.5prime
Subject Subject Range Query Range Percent Splice Strand
Ent3-RA 398..1482 1..1084 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:55 Download gff for FMO12575.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12854043..12854263 1..222 97 -> Plus
3L 12854452..12855013 223..784 100 -> Plus
3L 12855188..12855433 785..1030 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:28 Download gff for FMO12575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12847143..12847363 1..222 97 -> Plus
arm_3L 12847552..12848113 223..784 100 -> Plus
arm_3L 12848288..12848533 785..1030 96 -> Plus