FMO12576.5prime Sequence
1089 bp (1008 high quality bases) assembled on 2012-10-30
> FMO12576.5prime
AGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGCATGTGGCCC
GCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTGGAGACGGTC
ACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTCGCTGTCCAA
GCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGGGCAACATCG
GGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTAGCTATCAAA
GTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGACGGACATTAC
CCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAACAGATCTTCT
CGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCCCAGTGCGAC
AAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGATGGCAAGGA
TGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGTTGTGGCGAC
AGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAGGGCAAGAAG
CTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGCTGGACGTGG
CAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATACGCGCGAAC
AGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATGCCCAACAAC
GTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGCCGGATACGG
AATTCAGCTAGTCAAAATACAGACTGTGGGCGAGGCTGACATCGATTTGC
GGCATAGCACTCTCGATGCGCACCACCAAGTTGTCGATATGGGAGTGTAC
GATACACGTCCGCCACGTCCTAACTCGATCGAATTGAACCGAAGCTATCA
GTCGGAGCAGATCGATGGTAGCACCTACGAGCAGCTTTCCACCGCAGATG
GGTAATCAGTATGCTGCACTTCGGCAACGGCATGGGTGCCCCAGCAGATG
CAAAATGCAGCATCAGCAGATGTATGACGGCTGAATGTATTCAAGTCGCA
TGCGCTGTTACGTCAACTTGACAGGGAGTGATGTCCGGA
FMO12576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-RB | 2815 | CG4636-RB | 261..1340 | 7..1085 | 5095 | 98.5 | Plus |
| SCAR-RF | 3037 | CG4636-RF | 363..1460 | 7..1085 | 4905 | 96.9 | Plus |
| SCAR-RD | 3118 | CG4636-RD | 363..1192 | 7..836 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10977961..10978706 | 7..752 | 3730 | 100 | Plus |
| 2L | 23513712 | 2L | 10980444..10980694 | 836..1085 | 780 | 92.5 | Plus |
| 2L | 23513712 | 2L | 10978880..10978963 | 753..836 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:25:49 has no hits.
FMO12576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:11 Download gff for
FMO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 245..1333 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:34 Download gff for
FMO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 253..1341 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:01 Download gff for
FMO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 253..1341 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:01 Download gff for
FMO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10977953..10978706 | 1..752 | 99 | -> | Plus |
| 2L | 10978880..10978963 | 753..836 | 100 | -> | Plus |
| 2L | 10980445..10980695 | 837..1088 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:34 Download gff for
FMO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10977953..10978706 | 1..752 | 99 | -> | Plus |
| arm_2L | 10978880..10978963 | 753..836 | 100 | -> | Plus |
| arm_2L | 10980445..10980695 | 837..1088 | 93 | | Plus |
