FMO12577.5prime Sequence
1071 bp (987 high quality bases) assembled on 2012-10-30
> FMO12577.5prime
TCGACATGAAATGTAAAAGCTGGTCCAACAAAATTAACAACTACGTTGTG
CGCAAAATAAAGTCTATCAAGATCAACGGTACACAGCAACAGCTCCAATT
GCCAGGCAGCGGCGCTAGCGGAATCGCAGCGGCAGCCGTAATCACGGTAG
CATCGGATTGCGGCGAAAACTGCAGCAGTAACGGCACCGAGCATCAGCAG
CACTTCAACATTGCTACCACCACAGCAACTTCGGCGACAGAGGCAACAAT
GCCGGCTATGGCCAAGGAGAAAGCATCAGCAACAGTGTCCTTGGGCGAGT
CGAATTTCAGAGATATCAACCTAAAAGACTTGGCCGTGGTCGTCGAAGCG
GCATCGCGGCTGCACCACCAGCAAAACGTATGCGGCTGCGGAGCGGTATC
GTCTACTGAGAACAACAACAACAGTCGCTACGGCAGCAGCAAGTATCTGA
CAAACGGCCACACGTCGCCTTTGGCGGCAGCGGTTGCTAGCAACAGTTCG
TCGGTGGCCACGACACCGCATTGCAGAATGTTGCACAACTGCAGTCTGCA
GCAGTACCAGAATGACATAAGGCAGCAGACGGAGATATTGGACATGTTGC
GGCAGCAGCATCAGCAGGGCTACCAGTCGCAGCAACAGCAACAACAGCCG
CAGCAGCAGCAGGAACAACAGCAGCAGCAGGAGCAATCGCAGCAGCAGCA
ACAGCTACAGAATCCTGCGCCCAGGAGGTCTCCGAATGATTTCATTTTCG
GTCGTTACATAGCGAGGGCAGCTATAGCATAGTTTATCTGGCCGTGGATA
TACACTCTCGCCGCGAGTATGCAATTAAAGTATGCGAGAAGCGGCTGATC
CTGCGCGAACGGAAGCAGGACTACATCAAGCGTGAACGCGAGGTGATGCA
CCAGATGACCAACGTTCCCGGCTCGTAAACTGTCGTGCACTTCCAGGACA
GCGTTCTCTTTACTTTGTGATGACGTACGCGCGAAGGCGAACATGTGCAT
ACATCACCGCGTGGTAGCTTGACGTGCTGCCGCGCCACTACGCTGCGAGC
TTTCTGCTGACTGCAGACCAT
FMO12577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdk1-RJ | 4959 | CG1210-RJ | 373..1441 | 5..1059 | 4925 | 98.3 | Plus |
| Pdk1-RD | 3706 | CG1210-RD | 373..1441 | 5..1059 | 4925 | 98.3 | Plus |
| Pdk1-RH | 4347 | CG1210-RH | 427..1431 | 69..1059 | 4605 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 135456..135843 | 70..457 | 1940 | 100 | Plus |
| 3L | 28110227 | 3L | 135966..136339 | 456..828 | 1805 | 99.5 | Plus |
| 3L | 28110227 | 3L | 141765..141934 | 820..985 | 635 | 97.1 | Plus |
| 3L | 28110227 | 3L | 129822..129888 | 5..71 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2686 | 357..706 | 268 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2660 | 411..716 | 190 | 56.5 | Plus |
FMO12577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:11 Download gff for
FMO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk61C-RD | 368..1447 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:38 Download gff for
FMO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RD | 370..1449 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:05 Download gff for
FMO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RD | 370..1449 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:05 Download gff for
FMO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 129819..129888 | 1..71 | 95 | -> | Plus |
| 3L | 135458..135842 | 72..456 | 100 | -> | Plus |
| 3L | 135967..136335 | 457..824 | 99 | -> | Plus |
| 3L | 141770..142025 | 825..1067 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:38 Download gff for
FMO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 129819..129888 | 1..71 | 95 | -> | Plus |
| arm_3L | 135458..135842 | 72..456 | 100 | -> | Plus |
| arm_3L | 135967..136335 | 457..824 | 99 | -> | Plus |
| arm_3L | 141770..142025 | 825..1067 | 92 | | Plus |
