FMO12578.5prime Sequence
1090 bp (952 high quality bases) assembled on 2012-10-30
> FMO12578.5prime
GTCGACATGGAGAAGTTTCCGCTGAAGGGCAGCAGGGAGGCCGCCGCGGA
GGGCAACAGCTACATAACCGCCTACCAAACGGTCATGAAAAAGTCGAACG
GCCACACAAACGGAGCCGGCGGCGACGGCGACCTAGACGGAACTTTTCGT
GACCATCCGCTGGCGCAGCACACCAAACTGACCACCTCGCTGACGGCGGC
GGGCACCGACGACGAGGATATGATTGACATCACACCCCGCTCCAGTCCAG
GCGATGTGATCGGCGGCGGCGGAGGAGGAGGAAGCAGCAGTGGCTATCAC
CGGGAAACGGCCACCGAATCGGACACCGAACGAGATTTCGGACACTCTGG
CGGCAACGGCGGCGGCAATCACCACAATCAGCGGACAATGCACCAGCATG
TGCCAACTCACAGTGCCTTCGGCGATCCTATGGACGGAGCACTATCCTTC
TATGGTTCCTCGGACGTGCAAGATGATATTCCTGGCATTGGGCAGTACGA
AGATTTTCACACCATTGATTGGCAGCGGGACATTGCCCGTGATCGGATGC
GACATCGCTACATAGTCAAGAAGCGACAGGACTCCTTGTGGGATCTGATA
AAGGGTTCCATTGATGCCGGATCTGGCTGGCTATGTGTTTTACTCGTCGG
AATTGCCGCAGGCTGTGTGGCGGGCATGGTGGACATTGGAGCTAGTTGGA
TGTCGGATCTAAAGCATGGCATTTGTCCACCCGCCTTTTGGTTTAACAGG
GAAACAATGCTGCTATCCGGCCAAACAGTCAGTATTTGAAGAAGCAACTG
CTCGACGTGGAAAACCTGGCAGAGATCTTTGGGTTTGGATCGAAATGGCA
CCGGACCATATATCGTCGCTTACATCTGGTATGTGCTGTGGCTTTGCTTT
TTGCTTCGCTCAGCGCCTCCCTTGGTCCGAATGTTTGCCGCCCTACGCCT
GCGATTCTGGTATTCCCGAGAATAAAGACCATCTTGTCTGGCTTCATTAT
ACGCGGCTATTCTAGGAAGGTGGACGCTGCTGAATCAATCGGTGGGTCTG
ATGCGTCGATCCGCTGCCCCACTTGGGCAATAGGACCCAT
FMO12578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-c-RD | 3962 | CG5284-RD | 379..1466 | 7..1090 | 4945 | 97.8 | Plus |
| ClC-c-RC | 3718 | CG5284-RC | 379..1466 | 7..1090 | 4945 | 97.8 | Plus |
| ClC-c-RB | 3319 | CG5284-RB | 63..1067 | 90..1090 | 4515 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16091514..16091859 | 92..437 | 1730 | 100 | Plus |
| 3L | 28110227 | 3L | 16092751..16092959 | 599..807 | 950 | 99 | Plus |
| 3L | 28110227 | 3L | 16092531..16092699 | 436..604 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 16093015..16093259 | 807..1054 | 795 | 94.4 | Plus |
| 3L | 28110227 | 3L | 16090832..16090918 | 7..93 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:03 has no hits.
FMO12578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:12 Download gff for
FMO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 370..1447 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:43 Download gff for
FMO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 370..1447 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:09 Download gff for
FMO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 370..1447 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:09 Download gff for
FMO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16090823..16090918 | 1..93 | 95 | -> | Plus |
| 3L | 16091516..16091858 | 94..436 | 100 | -> | Plus |
| 3L | 16092532..16092698 | 437..603 | 100 | -> | Plus |
| 3L | 16092756..16092959 | 604..807 | 99 | -> | Plus |
| 3L | 16093016..16093283 | 808..1074 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:43 Download gff for
FMO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16085632..16085798 | 437..603 | 100 | -> | Plus |
| arm_3L | 16083923..16084018 | 1..93 | 95 | -> | Plus |
| arm_3L | 16084616..16084958 | 94..436 | 100 | -> | Plus |
| arm_3L | 16085856..16086059 | 604..807 | 99 | -> | Plus |
| arm_3L | 16086116..16086383 | 808..1074 | 93 | | Plus |
