FMO12579.5prime Sequence
1085 bp (958 high quality bases) assembled on 2012-10-30
> FMO12579.5prime
TCGACATGCTGGCTGCTTTGATTTACACTATTTTGGCGATTTTACTGAGT
GTTCTGGCCACGTCCTACATATGCATTATATATGGAGTCAAGCGCCGCGT
TCTGCAGCCCGTTAAAACAAAGAATTCAACCGAAATCAATCACAATGCTT
ATCAAAAATATACCCAGGCTCCAGGACCACGACCATGGCCCATCATTGGT
AATCTTCATCTGCTGGATCGATACAGGGATAGTCCCTTTGCGGGATTCAC
GGCGTTGGCACAGCAATACGGAGACATATACTCCCTGACCTTCGGACACA
CCCGCTGTCTGGTGGTGAACAACTTGGAGCTGATCCGCGAGGTGCTCAAT
CAAAATGGCAAGGTGATGAGCGGGCGGCCAGACTTCATACGATATCATAA
ACTATTTGGTGGCGAGCGGAGCAATTCGTTGGCTCTGTGTGATTGGTCAC
AGCTGCAGCAGAAGAGAAGGAATCTGGCCAGGCGTCACTGCTCGCCCAGG
GAATTTTCCTGCTTCTACATGAAAATGTCCCAGATTGGTTGCGAGGAAAT
GGAGCACTGGAATCGGGAGCTGGGAAACCAACTCGTTCCTGGAGAGCCGA
TCAACATCAAGCCTCTGATTCTGAAGGCCTGTGCAAATATGTTTAGTCAG
TACATGTGTTCGTTGAGGTTCGACTACGATGATGTGGACTTCCAACAGAT
TGTTCAATACTTCGATGAGATATTCTGGGAAATCAATCAGGGACATCCGC
TGGATTTTCTACCCTGCTATATCCCTTCTACCAGCGACACCTGAACAAGA
TCATCAACTGGTCCTCGACTATCAGGGATTCATAATGGAAGGATTATCCG
GCATCGGAGCTGAGCGTCGATTTGGATGACCAGATCGGGACTTCACAGAT
GCTCTACTTAAAGCCTGCTTGAAGATAAGATGTCTCCCGGAACACGATAT
CTCATGCTGAGATTTCATTGTGACATTTCAGCGGTTGAAATCTAGTAATG
CTAGTGCTGGCTATATAGCAAATTTGATTGAAGAAAATTACCAGAGGAAT
GACGCAATATTGAAAGAGAATTGGTCATAATGCTG
FMO12579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spo-RC | 2489 | CG10594-RC | 354..1381 | 6..1019 | 4730 | 98.3 | Plus |
| spo-RA | 2187 | CG10594-RA | 52..1079 | 6..1019 | 4730 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5591200..5592218 | 1011..6 | 4390 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:26:10 has no hits.
FMO12579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:13 Download gff for
FMO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 354..1395 | 1..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:46 Download gff for
FMO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 46..1087 | 1..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:13 Download gff for
FMO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 46..1087 | 1..1026 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:13 Download gff for
FMO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5591200..5592219 | 1..1011 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:46 Download gff for
FMO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5584300..5585319 | 1..1011 | 98 | | Minus |
