FMO12580.5prime Sequence
1097 bp (987 high quality bases) assembled on 2012-10-30
> FMO12580.5prime
AGTCGACATGTCGAAGCCCCAGAACAACGACACTCTGGAGCTGGACGACA
TCCTAAGCCAGCCAGTGAAGGACAAGGAGCGCTTCGCCGCCTTTATGATG
CGCAAGCTTGCCGAAAATAAGCCGGCACAGAATGACAATCTCTTTGGAAA
CTTCAAACTTGACTTTGACCTTGATTTCGAGGTTCCACTGATCAAGAAGT
CTCAGGCTAAGCCCAAGTCCAAACTACCAGAAGTACAGCCCCTTGGGGAG
TTGGTCAGCAAAAACAGTGCCGCCACCGAGAAAGTCAATGAGCCGCCTGT
GGACCAGGCCCCCAATGAGAACGTGCCTCCGCGTCGATCGCCAACATTGT
CGCCCAATAACCGACGTTCCATGCGCCGCAGTGGAAATGTACCCGGATCT
GATAAACTACGTCGACATGCCATCCGCCGGCGGTCCAGGAGCTGTGGACG
CCTATTGCTTCCAGAGTTTGAGGAGACCGTAAACTTGACCCGCAGCATAT
CAAGTCCTGTAAACTTCTTACCAGAAATAAGCAGCACACCTTGCACAGAG
AAACAAAAAGAGGAAGTTGCCAAAAATACAACAAGAGTGGAAACTGATAA
ACCAGCGGAAAAACCTATGGAACTATCACAAGAACCAGAGCCGGAAAATC
CGCTGCAGACAAAGGTGACCTCACCTGCCAGGAACCCTATTCTTGCAGCT
GAAATTGAACAAATCTGCAAAGAGCGACAGAGTTCCTTTCACAAGAATGT
ACTGCAGCTGGACTATTCTGGACGGGCACCGTACTCGCGACCCCCTACTC
CGTCATCACCATCCGTTGCGGGCCTACGACGTACCTACACAATGGAAAAG
GGCCCAGCTCCAGGCCAGCTGCTGCTATCGCATCACATCGCTATGACACA
CCGAGCAAATGCCAGTAGTTAAGGCAAGCGTCATCATGAGTAATGTTCCG
GACACGCCAGAGCGACAAGTCACGACCCAGCTGCAATCAAGCCACGGAGT
CGTATGCCGAACCCAGCCGCAGATCTGGGAAGAGTGTGCAGAACTCTGTT
CCGCAGCGATCAGCCATTGGGGTGAATAAACCACTTCAATTCGAATC
FMO12580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cenp-C-RB | 4453 | CG31258-RB | 151..1264 | 8..1097 | 4755 | 96.5 | Plus |
| Cenp-C-RA | 4682 | CG31258-RA | 151..1264 | 8..1097 | 4755 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8564329..8564836 | 10..517 | 2525 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8564898..8565309 | 518..927 | 1960 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:17 has no hits.
FMO12580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:13 Download gff for
FMO12580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cenp-C-RA | 130..1127 | 8..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:52 Download gff for
FMO12580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cenp-C-RA | 151..1148 | 8..993 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:16 Download gff for
FMO12580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cenp-C-RA | 151..1148 | 8..993 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:16 Download gff for
FMO12580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8564326..8564836 | 7..517 | 99 | -> | Plus |
| 3R | 8564898..8565385 | 518..993 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:52 Download gff for
FMO12580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4390048..4390558 | 7..517 | 99 | -> | Plus |
| arm_3R | 4390620..4391107 | 518..993 | 97 | | Plus |
