FMO12581.5prime Sequence
1066 bp (973 high quality bases) assembled on 2012-10-30
> FMO12581.5prime
AGTCGACATGTGCGCGGCAGGCAGTCCCATCGTCAGTGCTCTCCTTCGGC
AGAATGTGCTCCTGCGAGCTGGTGGTGTCCTCCGGAGCTGGGACCCCATC
TCCTCCAGCCTGTCCCCCTCGCCGTGCAAACCAAACTATAGTTTCGAGGC
GCGCGCTTTCGCGTCGGACGCTGGAGCTTCCGCTCCAGCTGCAACCGCCC
AGATCTCGCACCCAAAAACAGTGAGTGATTTCCAAAAGCTTCACGAAGCC
ACCAAAAAGAAGTTCCAATCCAAGAAGCTGCCCTCCGATGTGCATCCAGA
TGCGGTCTTCGCCTGCAACGAGCTCGATCTCAGCGAGGTGCAGGTGTACG
GATTCGATTACGACTACACGCTGGCCTGCTATAAGCCCATCCTGGAGGAC
CTGCTGTACAATCTGGCTCGCGAGATGCTGGTGAAGAGGTTCCGCTACCC
GGAGGACATCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCC
TGCACTACGACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTG
CAGCTACAGCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGA
TGAGGTGCTGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGG
AGGGGCCGAACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAA
TTGGCCGACCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAAT
CGAATATTTTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCC
ATGACACCAGGACCGCCATGGCTCCTGCCATCCCATTATGCACGGCAGGT
GATGCGGACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAGTTC
TTCGAGAGCTGCAGCAGCGGCAAGAATCTCTTTCTAGTCACCATAGCCCG
TACTCGATTTAAACTGTGGCATGTCTTCTGTCGCGCACTGCTGATTTCTC
GATGTGTCATCGTGCAGGCCGCACAAGTCTTTACGGATGATCTGGACAAT
AGCTTATCGACGAGCG
FMO12581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1814-RA | 1929 | CG1814-RA | 126..1213 | 8..1066 | 4705 | 97 | Plus |
| CG1814-RB | 1880 | CG1814-RB | 339..1164 | 270..1066 | 3395 | 96 | Plus |
| CG1814-RC | 1673 | CG1814-RC | 132..957 | 270..1066 | 3395 | 96 | Plus |
| CG1814-RB | 1880 | CG1814-RB | 126..338 | 8..220 | 1065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9579963..9580366 | 270..673 | 2020 | 100 | Plus |
| 2R | 25286936 | 2R | 9579575..9579836 | 8..269 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 9580451..9580742 | 673..956 | 1080 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:26:24 has no hits.
FMO12581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-30 10:55:14 Download gff for
FMO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RA | 118..1194 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:56:56 Download gff for
FMO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RA | 120..1196 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:20 Download gff for
FMO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RA | 120..1196 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:20 Download gff for
FMO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9579569..9579836 | 1..269 | 98 | -> | Plus |
| 2R | 9579963..9580366 | 270..673 | 100 | -> | Plus |
| 2R | 9580452..9580745 | 674..960 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:56:56 Download gff for
FMO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5467074..5467341 | 1..269 | 98 | -> | Plus |
| arm_2R | 5467468..5467871 | 270..673 | 100 | -> | Plus |
| arm_2R | 5467957..5468250 | 674..960 | 96 | -> | Plus |
